Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso10g2120 | ATGGCTCCGCCGCTCGAACACAACGGCGTTTCCACCAGCGGTGACTCTCTGAGATCTATTCCGACGCCGTTTCTCACCAAAACCTTCCAACTCGTCGACGATCACACCATCGACCATGTGATTTCGTGGAACGATTCTGGATCGTCCTTCATCGTCTGGAACACCACCGCTTTCGCCAAGGATTTGCTTCCTAAATATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTATGGATTCAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTCCGAAGAGGCGAGAAGCGGCTCCTCTGCGAAATACAGCGACGGAAGATCCTCCCGGCAACGCCGCCGACCCGAGCGACTGCGACTACGACCGCGGCGGTTCTATCTCCGCTGCCGCTATCTACGATTCCGCCGGCGAAGCTGATCGTGTCGCCGTCGAACTCAGCGGAGGAGCAGGTGATTTCGTCTAACTCGTCGCCGGCGGAGCTGTTGGATGAGAACGACCGGCTGAGGAAGGAGAACATTCTGTTAACGAAGGAATTGGAGGAGATGAGATCGCTCTGCAACAATATATTCAATCTCATGTCGAATTACGCTAACGTTCAAGCGGACGGTGATTCCGCGGGGGCGGCGGCGCGGTGCTTCGGCGAGGATGCGGTGGAGGAGATGAATCCGAAGCTGTTTGGGGTGGTGATTGGTACGAAGCGAGCGAGAGAAGAGAATGATACGGTTTTGAGTCTGCATCAGCCGTTCCATGCGGACGTGAAATCCGAAGCGTTGGATTTCGCAAGACGTGGCGAAAATAAAAAAACGCCGTGGCTAAATCAATGTCATAGAGCAAATCAGAGAGTGTGTAATTGA | 876 | 0.5331 | MAPPLEHNGVSTSGDSLRSIPTPFLTKTFQLVDDHTIDHVISWNDSGSSFIVWNTTAFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKILPATPPTRATATTTAAVLSPLPLSTIPPAKLIVSPSNSAEEQVISSNSSPAELLDENDRLRKENILLTKELEEMRSLCNNIFNLMSNYANVQADGDSAGAAARCFGEDAVEEMNPKLFGVVIGTKRAREENDTVLSLHQPFHADVKSEALDFARRGENKKTPWLNQCHRANQRVCN* | 292 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso10g2120 | 291 | SUPERFAMILY | "Winged helix" DNA-binding domain | 21 | 113 | IPR036390 | - | |
Gso10g2120 | 291 | PRINTS | Heat shock factor (HSF) domain signature | 24 | 47 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g2120 | 291 | PRINTS | Heat shock factor (HSF) domain signature | 62 | 74 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g2120 | 291 | PRINTS | Heat shock factor (HSF) domain signature | 75 | 87 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g2120 | 291 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 11 | 211 | IPR027725 | - | |
Gso10g2120 | 291 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 222 | 276 | IPR027725 | - | |
Gso10g2120 | 291 | Coils | Coil | 172 | 192 | - | - | |
Gso10g2120 | 291 | ProSitePatterns | HSF-type DNA-binding domain signature. | 63 | 87 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g2120 | 291 | Gene3D | - | 17 | 114 | IPR036388 | - | |
Gso10g2120 | 291 | Pfam | HSF-type DNA-binding | 24 | 113 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g2120 | 291 | SMART | hsfneu3 | 20 | 113 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Gso10g2120 | 291 | PANTHER | HEAT STRESS TRANSCRIPTION FACTOR B-2A | 11 | 211 | - | - | |
Gso10g2120 | 291 | PANTHER | HEAT STRESS TRANSCRIPTION FACTOR B-2A | 222 | 276 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso10g2120 | Gso-Chr10 | 48185142 | 48186433 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso10g2120 | 2 | 291 | HSF | AT5G62020 | 49.538 | 1.00e-87 | 262 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Gso10g2120 | HSF_DNA-bind | 2.7e-32 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso10g2120 | K09419 | - | gmx:100808202 | 552.362 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso10g2120 | 10 | 48185142 | 48186433 | Gso10g2120 | 10 | 48185142 | 48186433 | ECH | |
Gso20g1257 | 20 | 42661635 | 42663069 | Gso10g2120 | 10 | 48185142 | 48186433 | GST | |
Gso16g1571 | 16 | 36240774 | 36242452 | Gso10g2120 | 10 | 48185142 | 48186433 | PCT | |
Gso9g1182 | 9 | 34001674 | 34003359 | Gso10g2120 | 10 | 48185142 | 48186433 | PCT | |
Gso10g2120 | 10 | 48185142 | 48186433 | Gso16g1571 | 16 | 36240774 | 36242452 | PCT | |
Gso10g2120 | 10 | 48185142 | 48186433 | Gso9g1182 | 9 | 34001674 | 34003359 | PCT |