Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2108 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGAGTCAGAAGGGGAGCTTGGACACCTGAAGAAGACCAATCTTTGGTTGACTACATCCACAAACATGGCCATGGAAGTTGGCGTTCACTTCCCAAACATGCAGGTCTCCTACGATGTGGAAAAAGCTGTCGGCTTCGGTGGATAAACTATCTTCGTCCTGGCATCAAGCGTGGCCCATTTACTAGTGAAGAAGAAAGTACAATTGTTCAACTTCATGGCATGCTTGGCAACAGGTGGGCTTCTATAGCATCCCAACTACCTGGAAGAACAGACAATGAGATTAAGAACTACTGGAATACCCATCTGAAGAAGCGTCTCCTTCGATCATGTTATTCCCAAAGAGCAAAACAGCTATGTGTGATTCCTGATCCAACGATTGTGAAGTCTGAATCTCCTTCGACGCGTCACATGGTACAATGGGAGAGTGTGAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCACAATGCTCAATTCATGGCCAACGAGTAAAACATGCCCTGATCACTTTCTTCAACTTTGGAATTCAGAGGTTGGAAAGTCATTTCGCATGATCAAGGGAAAGGAAGAAGGAGTAGTGAGTCAAAGCCTTGTCTCACAACCTTCATCCTCATCAAAATTGGAGTCTTGTTCAGATGTGTCATTGCAGGTGAAAAACAACACTGGAAATAGTAGTTGCATTCCAAAGCTGGAGGATGTGAGCATGGTTCATGAACAAACAAGTAGCTACAAACCAAAGCTTGATGATGACACAGCTGGTTCTGACTCAGGCAATTATGAATTTCTTGATACTTCTGATTCAACACTGAAGCACCTTCTACATATGCCTGATAGTGATATGGGATTCTTGGGACAGAATGATCATTTCCAAAATCTCCTTGATGGTACATGTGACTAA 930 0.4355 MGKAPCCEKHGVRRGAWTPEEDQSLVDYIHKHGHGSWRSLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEESTIVQLHGMLGNRWASIASQLPGRTDNEIKNYWNTHLKKRLLRSCYSQRAKQLCVIPDPTIVKSESPSTRHMVQWESVRVEAEARLSMESTMLNSWPTSKTCPDHFLQLWNSEVGKSFRMIKGKEEGVVSQSLVSQPSSSSKLESCSDVSLQVKNNTGNSSCIPKLEDVSMVHEQTSSYKPKLDDDTAGSDSGNYEFLDTSDSTLKHLLHMPDSDMGFLGQNDHFQNLLDGTCD* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2108 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso10g2108 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso10g2108 309 CDD SANT 69 112 IPR001005 -
Gso10g2108 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso10g2108 309 MobiDBLite consensus disorder prediction 248 268 - -
Gso10g2108 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 298 - -
Gso10g2108 309 CDD SANT 16 61 IPR001005 -
Gso10g2108 309 SMART sant 66 114 IPR001005 -
Gso10g2108 309 SMART sant 13 63 IPR001005 -
Gso10g2108 309 Gene3D - 14 66 - -
Gso10g2108 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso10g2108 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso10g2108 309 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso10g2108 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso10g2108 309 Gene3D - 69 116 - -
Gso10g2108 309 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2108 Gso-Chr10 48094282 48096906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2108 1 297 MYB Transcription Factor Family AT3G61250 50.000 3.48e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g2108 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2108 K09422 - gmx:100807142 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2108 10 48094282 48096906 Gso10g2108 10 48094282 48096906 ECH
Gso20g1269 20 42744123 42747018 Gso10g2108 10 48094282 48096906 GST