Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2091 ATGTCAGAACCTGAGGAAGAAAATAACCAAGACTATGTTCCCAGGTCAAAGCCAGCAGAGGAAGGTGGTGGTGGCTGCACCACCATGGACTTCGATCTGGACTTAGAAACTTCATGGCCTTTGGATCACATGGCCTTTGGCTCAAACCCCATGTCACCTTTCTTGTTCTCCACTTCCTCTGACCAACCTTACTCTCCTCTTTGGGCTTTCTCTGATGGAGAAGACCCCAAGCTTCCTGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCTCTTGCGATTCAAATTCAATAGCTGAAAAGCCAGTGGAGAATGATGACAACAAAAAAAATTTGCCACCACTTGTGCCTATGCCACCAGTGGAAAATTTGGATGGTTATTGTGTAATCAAGGAAAGGATGACACAAGCGCTTCGTTACTTCAAAGAGTTGACTGAACTGAATGTTCTAGCTCAGGTTTGGGCACCAGTACGGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCGCATAGTAATGGGCTCCATCAGTATAGAACAGTCTCTCTGATGTACATGTTTTCTGTGGATGGGGAGAATGATGGATCTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCAGAATGGACTCCAAATGTTCAGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCAATCCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACCGAAGATTAATTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATTTGTAATGAAGGTCGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTATGTGAAACTCTTAATTTACCTCTGGCCCAGACATGGATTCCCTGCAAGCATCGAAGTGTTTTGGCCCAAGGTGGTGGTGTAAAAAAAAGTTGCTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTCTATATTATAGATGCTCATTTATGGGGTTTTCGGGAGGCCTGTGTTGAGCATCACTTACAACAAGGCCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCACAGCATGTGCTTCTGTTCAAACATTACCCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTACAATATGCTTACGAAGCTCTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGAATCACAGACTTTCATGAACAAAAGACTTTGTTGGGATCCATATTGGCAATAATGAAACAGCATTTCCAGAGTCTCAAGATTGCTTCTGGTGTTGAACTTGAGGATGGTTCAATTGAAATTATTGAAGCAACAATTGAAAGAGTTCATACGAGGCATGAATCTATTCCAATTACACCATCTATTAAATCACCACCTAGACTTGATACCTCACCAAACATGGGGGAGGAAGTGCCACAGGATCCATCAGAACAACAAATATTGATGTACTGTAACGACATGAATGATGGAAGGAGTCTTGGTAAAAATGCAGACGGAATTGATCATATGCCCTCCATAGAGACTAAAAACATAAAGAAACCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATCAGTCTTGAAGTCTTGCAACGTTATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACCACAATGAAGCGCATCTGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCGAAGCTCAAGCGTGTTATAGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTTAGCAAAAGTCCACTTCCCATTGCTGTTGGTTCCTTTCCTGAGCCTTCTACTCCAAACAAGTTCAGCCAGTCAGCCTCATTAAGCATTAAGCCATCAGAGCCTCAGGTGAAAGAGAATGAATTGAATGCCTCCAAAGCATTAGAAGCAAACAGACAGGCTGGAATGGAAGATCAATTGCTGGGAGGAAGGACACAGAATCTTGAGAAAGTAATTAATGATAAAGGTGGGTACACTCGAGAGGTTGGGAGAGAACCAAAAAGGACTAGAACTAGGAATGGCTCAAGTGAGGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGACAGTCCCCCAAACGAAAGTTCTCCTGTAAAGGATATATTCATTACTTCCAACAATGATCAATGTGCTGGGATAAAGAGATCACCTGAGTCAACACTGCAGCCAACTATTAATACGCCAAGCCGGCCAACTGCTTACCCTATGCCTGACTTTGTGGCCGTAGAACTTCAAGAGCCATTTGGAGGGATGCTAATAGAGGATGCTGGTAGTTCCAAAGACTTAAGAAATTTGTGTCCTTTAGTAGCCGAGGTCATTTTGGAGGATATGATTCCAGAAGCTTGTGGGACTAATCTTCCAGGTCCTGATTTGTCTCCTAAGCTAAGCATGGGTACTCCTAATAAAGCAGTGACACCTTTTGCAGCTATGAAAGAAATGAAGACGGTGACAATCAAGGCAACATACAGAGAAGATATCATTAGATTTCGAGTCTCATTGACCTGTGGCATTGTTGAACTGAAAGAAGAAATTGCCAAAAGATTGAAGCTAGAGGTGGGTACATTTGATATCAAATACCTGGATGATGATCACGAATGGGTTTTGATAGCCTGTGATGCAGACCTACAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGTAACATAATCAGGGTTTTGGTGCATGACATAACTTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGGGAGTGA 2976 0.4278 MSEPEEENNQDYVPRSKPAEEGGGGCTTMDFDLDLETSWPLDHMAFGSNPMSPFLFSTSSDQPYSPLWAFSDGEDPKLPASAFSDCHKIFSCDSNSIAEKPVENDDNKKNLPPLVPMPPVENLDGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDGSLGLPGRVFQQKLPEWTPNVQYYSSKEYPRRDHAQHYNVRGTLALPVFEPSIQSCVGVLELIMTSPKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCETLNLPLAQTWIPCKHRSVLAQGGGVKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFLSHSMCFCSNITQFCKTDYPLVHYALMFGLTSCFTICLRSSHTGNDDYVLEFFLPPRITDFHEQKTLLGSILAIMKQHFQSLKIASGVELEDGSIEIIEATIERVHTRHESIPITPSIKSPPRLDTSPNMGEEVPQDPSEQQILMYCNDMNDGRSLGKNADGIDHMPSIETKNIKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSKSPLPIAVGSFPEPSTPNKFSQSASLSIKPSEPQVKENELNASKALEANRQAGMEDQLLGGRTQNLEKVINDKGGYTREVGREPKRTRTRNGSSEDSTNPTSHGSCHDSPPNESSPVKDIFITSNNDQCAGIKRSPESTLQPTINTPSRPTAYPMPDFVAVELQEPFGGMLIEDAGSSKDLRNLCPLVAEVILEDMIPEACGTNLPGPDLSPKLSMGTPNKAVTPFAAMKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEIAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2091 991 Pfam PB1 domain 896 977 IPR000270 GO:0005515
Gso10g2091 991 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 990 - -
Gso10g2091 991 MobiDBLite consensus disorder prediction 755 812 - -
Gso10g2091 991 MobiDBLite consensus disorder prediction 716 813 - -
Gso10g2091 991 PANTHER PROTEIN NLP8 5 990 IPR045012 GO:0003700
Gso10g2091 991 CDD PB1_NLP 897 977 IPR034891 -
Gso10g2091 991 SMART PB1_new 896 978 IPR000270 GO:0005515
Gso10g2091 991 MobiDBLite consensus disorder prediction 512 535 - -
Gso10g2091 991 MobiDBLite consensus disorder prediction 734 754 - -
Gso10g2091 991 MobiDBLite consensus disorder prediction 676 699 - -
Gso10g2091 991 MobiDBLite consensus disorder prediction 1 31 - -
Gso10g2091 991 ProSiteProfiles PB1 domain profile. 896 978 IPR000270 GO:0005515
Gso10g2091 991 Pfam RWP-RK domain 587 635 IPR003035 -
Gso10g2091 991 ProSiteProfiles RWP-RK domain profile. 574 655 IPR003035 -
Gso10g2091 991 SUPERFAMILY CAD & PB1 domains 892 981 - -
Gso10g2091 991 MobiDBLite consensus disorder prediction 675 699 - -
Gso10g2091 991 Gene3D - 893 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2091 Gso-Chr10 47861047 47865877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2091 893 991 NLP Transcription Factor Family AT1G64530 60.000 2.16e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso10g2091 PB1 4.8e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2091 - - gmx:100786118 2013.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1286 20 42923530 42928731 Gso10g2091 10 47861047 47865877 GST
Gso16g1503 16 35265669 35270338 Gso10g2091 10 47861047 47865877 PCT
Gso9g1122 9 32221347 32225994 Gso10g2091 10 47861047 47865877 PCT
Gso10g2091 10 47861047 47865877 Gso16g1503 16 35265669 35270338 PCT
Gso10g2091 10 47861047 47865877 Gso9g1122 9 32221347 32225994 PCT