Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2089 ATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAGGGACATGTCGTCACCAAGAAGGAATTGCCCCCACGCCCCTCGGATCGTAAGGGGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTTGCTGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGAAGGATAAGAGGGCACTTAAGGTTGCAAAGAGAAAGCTTGGAACCCACAAACGTGCAAAGAAGAAGCGTGAGGAAATGTCCAATGTTCTTAGGAAGATGAGGGCTGGTGGGGCTGGAGACAAGAAGAAATAA 333 0.4895 MAPKPPSTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2089 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Gso10g2089 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 IPR000509 GO:0003735|GO:0005840|GO:0006412
Gso10g2089 110 MobiDBLite consensus disorder prediction 87 110 - -
Gso10g2089 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Gso10g2089 110 Gene3D 60S ribosomal protein L36 2 108 IPR038097 -
Gso10g2089 110 MobiDBLite consensus disorder prediction 1 37 - -
Gso10g2089 110 MobiDBLite consensus disorder prediction 79 110 - -
Gso10g2089 110 PANTHER 60S RIBOSOMAL PROTEIN L36-1-RELATED 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2089 Gso-Chr10 47850795 47852264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2089 7 110 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 84.615 8.17e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2089 K02920 - gmx:100785591 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2089 10 47850795 47852264 Gso10g2089 10 47850795 47852264 ECH
Gso20g1288 20 42941050 42942686 Gso10g2089 10 47850795 47852264 GST