Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2088 ATGACGAAGCGTTGGCGTTGCAACGCGAAAGAGGAGGAGGCTCTTCTGATCCAATGCGTGTTACCGTATCTAACCCCGTCAGAACTCGCCGACCTGCAAATCCCTCCACAAAGATTGGTGAACTCGCAGGGTGGCTTCTCTTCTGCTCTTTTGGTTGTGAGGGAACATCTTCCTTCTGGAAAGGCATGTCTGAGAACAGGAAATGTTGCACGGTTTGTAAATCATTCATGTGACGGTGGTAACTTGAGCACAAAGCTAGTTAGAAGTTCAGGATCTTTGTTCCCCCGCCTCTGCTTCTTTGCTTCAAAACATATCCAAGTAGATGACGAACTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCCTAATGGGTTGCCATGCTTTTGCAACAGCCCTTCTTGCTTTGGAACCTCGCCCTCTCAAGACACTTGA 432 0.4745 MTKRWRCNAKEEEALLIQCVLPYLTPSELADLQIPPQRLVNSQGGFSSALLVVREHLPSGKACLRTGNVARFVNHSCDGGNLSTKLVRSSGSLFPRLCFFASKHIQVDDELTFSYGEIRKRPNGLPCFCNSPSCFGTSPSQDT* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2088 143 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 65 132 - -
Gso10g2088 143 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 65 132 - -
Gso10g2088 143 Pfam SET domain 61 116 IPR001214 GO:0005515
Gso10g2088 143 SUPERFAMILY SET domain 64 136 IPR046341 -
Gso10g2088 143 Gene3D SET domain 58 143 IPR046341 -
Gso10g2088 143 ProSiteProfiles SET domain profile. 1 116 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2088 Gso-Chr10 47847361 47848662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2088 57 137 Su(var)3-9 homologs AT5G04940 38.889 8.74e-08 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso10g2088 SET 3.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2088 K11433 - gmx:102662566 298.901