Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2086 ATGGGTAGCATCGTGGAAGACGCCGACACCGACACGGTGGTGTATGTGGCGGTCGGAAAGAACGCCTACAAGACGCAGCAACTGTTGCATTGGACGGTTAAGAATTTCTCCGGCAAAGAAATTTGCCTTCTTCATATTCACCAGCCTCACTCTCTCAATTCGTTCTACAGAAATCTCTCTGGGTATGAACCAAAAGACCATGCAACCAAGGCTTTCCAGGAGCATGGAAATCAAACAGTGCACAAACTTCTAGACCAATACGTTCTCACTCTGGTCCCTGCAGGGGTACGAGCCTACAAATTGTTGATTGAGATGGATGATATTGAGAAAGGAATCACAAAAGCTATTGCTCAACACAATATTAGATGGCTTGTAATGGGAGCAGCAGCAGACAGATATAACTTGGGGGAATATAGTAAGCATACTTCTGACATAGAGACTGGCCCTGCATTATTGGTGCTCAATCCAAATACAGATGCCAAGCAATTTGAAAATATCAAATCAGAATCGATTCCTGTTGGTGCACTGAAATATTTCGATTCTTATGATATGAAAGAGATCAAAAGTGTCAGTTCCCACCTTTCCTTAAATTCAAAATGGCCGTTTAATAATGTCATGATGGACAGGTCAAAGTTGGCAGATTTGATGTTTCATGAGGATAAAACATTTGAAAGCCAGTGTGCTAAGGAGATACGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAGCAAGAAGTACAGAAAATGAAGAATCAGCGAGATGAAATACTTGAAGAATTGCAAATGGTCCAAGACCAAAATTCAGCACTTATGAACCAAATTTCTGAGTCCCAGTGTACAGAAACAGAGTTGGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAACAGAGAGATAGGCTTAGGATAGAGCATGCAAATGCAGTTAGGGAAGTCAAAGTGCTGAGAAAAATTGGGGAAGCAGATACTTCCTTCTCTTATCGGGTAGAATTCCCTGCATTTTCTTTTGTGGAGATAAATGAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAAGGAAGGTATGGAAGTGTTTACAAGGGACAGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTTGTCAGAGTTTATTAGAGTTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAACCTGTTAACACTAATGGGAAGCTGTGCAGAGTCTCGGTCACTTGTGTATGAGTACATAAACAATGGCAGCCTTGAAAGCCATCTTGCCCACAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATATCCATTGCCACTGACATATGCTCTGCTCTAATCTTCCTTCACTCCAGTGAGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCCAACTTTGTTGCCAAACTCAGTGACTTGGGCATTCCTAGTTTAGTTCAGCGAAGTTTGGATTCAGCTGACACAAGCACAATATGTAATAACCCAAATGAACGTTTGGCATATGTGGATCCAGAGTATTTTGTCACTGGCAAGCTTACACCAGAATCGGATGTATATTCTTTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCCCTTTTGGGGCTAGTTAGAGATATGAAATGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGACTCTTCAGCTGGTGAATGGCCGTTTTTTCAAACTGAACAGCTGGCATATTTAGCATTGAGGTGTTGTGAAAAGACTTGGTTGAACCGGCCAGACCTTGTGTCTGAAATCTGGAGTGTTCTTGAACCATTCAAAGCAACTTGCATTGACACGCCACCACATTTGATTTCTAAGAAGCTTCGTCGGATTCCTTCCCATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTACGAAGAAGAGGCAATAAGAGGATGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAACTAGACCACACTGATTTGGTACCTAACTATGCTCTACATAATGCAATTCTGGAGTGGCAGCAACAGTGA 2115 0.4199 MGSIVEDADTDTVVYVAVGKNAYKTQQLLHWTVKNFSGKEICLLHIHQPHSLNSFYRNLSGYEPKDHATKAFQEHGNQTVHKLLDQYVLTLVPAGVRAYKLLIEMDDIEKGITKAIAQHNIRWLVMGAAADRYNLGEYSKHTSDIETGPALLVLNPNTDAKQFENIKSESIPVGALKYFDSYDMKEIKSVSSHLSLNSKWPFNNVMMDRSKLADLMFHEDKTFESQCAKEIRRRKEVEEQLAREKQEVQKMKNQRDEILEELQMVQDQNSALMNQISESQCTETELEEKIISAVDLLISFREQRDRLRIEHANAVREVKVLRKIGEADTSFSYRVEFPAFSFVEINEATNDFDPSWKIGEGRYGSVYKGQLRNMHVAIKMLPSYGCQSLLEFQHQVEVLSRVRHPNLLTLMGSCAESRSLVYEYINNGSLESHLAHKEKNPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQRSLDSADTSTICNNPNERLAYVDPEYFVTGKLTPESDVYSFGVILLQLLTGRPLLGLVRDMKCALEKENLKAVLDSSAGEWPFFQTEQLAYLALRCCEKTWLNRPDLVSEIWSVLEPFKATCIDTPPHLISKKLRRIPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2086 704 SMART Ubox_2 638 701 IPR003613 GO:0004842|GO:0016567
Gso10g2086 704 Coils Coil 227 275 - -
Gso10g2086 704 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 29 129 - -
Gso10g2086 704 Gene3D Transferase(Phosphotransferase) domain 1 425 620 - -
Gso10g2086 704 ProSiteProfiles U-box domain profile. 634 704 IPR003613 GO:0004842|GO:0016567
Gso10g2086 704 ProSitePatterns Protein kinases ATP-binding region signature. 358 379 IPR017441 GO:0005524
Gso10g2086 704 Pfam U-box domain 635 703 IPR003613 GO:0004842|GO:0016567
Gso10g2086 704 SUPERFAMILY Protein kinase-like (PK-like) 328 613 IPR011009 -
Gso10g2086 704 ProSiteProfiles Protein kinase domain profile. 352 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2086 704 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 216 703 - -
Gso10g2086 704 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 10 143 - -
Gso10g2086 704 CDD STK_N 13 147 - -
Gso10g2086 704 SUPERFAMILY RING/U-box 632 704 - -
Gso10g2086 704 PANTHER OS02G0152300 PROTEIN 216 703 - -
Gso10g2086 704 PANTHER OS02G0152300 PROTEIN 10 143 - -
Gso10g2086 704 CDD RING-Ubox_WDSUB1_like 639 680 - -
Gso10g2086 704 Gene3D Phosphorylase Kinase; domain 1 323 424 - -
Gso10g2086 704 Pfam Protein tyrosine and serine/threonine kinase 357 605 IPR001245 GO:0004672|GO:0006468
Gso10g2086 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 704 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2086 Gso-Chr10 47822019 47829366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2086 221 704 U-box Gene Family AT3G49060 53.893 8.05e-172 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gso10g2086 PK_Tyr_Ser-Thr 6.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2086 - - gmx:100799675 1394.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2086 10 47822019 47829366 Gso10g2086 10 47822019 47829366 ECH
Gso20g1291 20 42955593 42967945 Gso10g2086 10 47822019 47829366 GST