Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2085 ATGCCAGTTGCAAAACTCCCAGCCTCTGGCACTATCGATTTCAGGAAAACAGACGATGGAAGTGATTCTTTAGACACAATAATCAGACAAGCAATTGGAAAAGAACCTTTGCTTTCCTTTCCTAGGGCCGGTGACAGCCCAGTACAGTGGATTCAATTACTTAATGCTTTAGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTATCTCCTGTGAAGGTTCAGTTACAGAAGTGCAACAAGTGTTCTCGAGAATTTTGCTCTCCCATTAACTATAGAAGACATATACGCGTACAGCATCGATTGAAAAAGCTTGATAAGGATTCTGAAAAAAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCCATAGAAGAGTCAAAGGAAGTTGTGTCATTCAAGAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAGAAGCTTTGACAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCACAATATTATCTGAGGGCTGGTACTGCCCTTTTGAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAGCAGTGTCGATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAACTGGTGAAGGCCTGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAGAAGCTGCTGGTGGAGGAGGAGGAAGCTGCTCAGAAAAGAAAAGCTGAGATTTTAGAGAGGAAACGCCAAAAAAAGCTTAGACAGAAAGAACACAAGGCCAGGGAACGACTCGAAGATGACACAGAAATTAAAGAGAACATAAGCAGCACAGGAGAGGATGTTTTGCCAGCTGAAGCTTCTTCTGGTACATGTGACTTTGAAGCACAGAATCCAGATATATTTGCGGATCATTCTCCTCCACCACATGTAACTTCTCGCTGCCTAGACACTAATGAAGTTGTAGAAGGGGATACAGTGTCAGGTTATGATTTTGACACTGATCAGTATATAGAGCGACAGGCATCACGGGGACATAATCGCCGTCGCATAATGGCTGCCAGATGGCAAGGGCTGCCAAAATCACAATGGGCCAAAGCCAATGGTTCGCATGCAGGCCAGAATTCTCAAATGTCAAAGCTTGGAGTTATTCAAAAACATGGAACCAACCGTGATCAAAGGGCAGCTCCTATAGTTAATGGTAGTAAGGTTTGGAGCCGAAAACCTAAACCAGAAACTAATGGGGTGGTTTTAAAAGCCAAACTGCAGAAAGAACCAGACAAAGGTAAGAGTCATGAAGTTTTGATAGGATCTGTATCAGTTAGTCTGGATTATTGCAGCAGCCATTCACAAGGGAATTTGGTGGCAGCCCAGCGGGACTGCGTGGTAGAGAATCTAGCCAAGCAGAATACTGCTCAGGAAAAGCCAGTGAAACATGATTCCTTTCAGGGAAGTAATGGTCGGTTAACAGTTAAGCTTTGGAGGCCGGTTAGCCAGCTTGGAACTAAAGATCCATTGCCACTTCAAAATGGTGAGACAGAAGCTGATGTAATTAATGGAAAATATGACCAAAATTTGTCAGGTCAAAGTAGTTTACGGTTGTGTAGTATAGATGGTAGTGATATTGGTTTTGAGGACAATTTTTCCCACACTGGGGCTAAAGTAGATTCAGAAAGCTTACGTCTAACCAGCCATGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCTATCTCATCTAACCATGTGAAGTTGGTTGTTACACCTGATTGTCAATCTTCTAATGCGGACAGATTTAACATTCTTGCAAATACAGAGAACCGATTGCCTGCAACTTCTGGAGTTGCTAAATCCAAACCCAAAACAAAGCCTGAGAAGGGAATGAAGATAAAGTACATTCCCAAACAAAAAGAAGCAACCTAG 2013 0.4237 MPVAKLPASGTIDFRKTDDGSDSLDTIIRQAIGKEPLLSFPRAGDSPVQWIQLLNALDQQELPGWPLLSPVKVQLQKCNKCSREFCSPINYRRHIRVQHRLKKLDKDSEKNRDLLGAYWDKLSIEESKEVVSFKNVMLEEVPGSSILEALTTLRKQGFSSLPQYYLRAGTALLNIVQSRPSSFPISSQELFSILDDSSEKTFLVGSAVSMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLVEEEEAAQKRKAEILERKRQKKLRQKEHKARERLEDDTEIKENISSTGEDVLPAEASSGTCDFEAQNPDIFADHSPPPHVTSRCLDTNEVVEGDTVSGYDFDTDQYIERQASRGHNRRRIMAARWQGLPKSQWAKANGSHAGQNSQMSKLGVIQKHGTNRDQRAAPIVNGSKVWSRKPKPETNGVVLKAKLQKEPDKGKSHEVLIGSVSVSLDYCSSHSQGNLVAAQRDCVVENLAKQNTAQEKPVKHDSFQGSNGRLTVKLWRPVSQLGTKDPLPLQNGETEADVINGKYDQNLSGQSSLRLCSIDGSDIGFEDNFSHTGAKVDSESLRLTSHAAKAFLAQRWKEAISSNHVKLVVTPDCQSSNADRFNILANTENRLPATSGVAKSKPKTKPEKGMKIKYIPKQKEAT* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2085 670 Coils Coil 272 292 - -
Gso10g2085 670 MobiDBLite consensus disorder prediction 640 670 - -
Gso10g2085 670 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 104 IPR013087 -
Gso10g2085 670 MobiDBLite consensus disorder prediction 649 670 - -
Gso10g2085 670 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Gso10g2085 670 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2085 Gso-Chr10 47812595 47818112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2085 19 667 C2H2 Transcription Factor Family AT4G25610 45.468 2.67e-158 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g2085 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2085 - - gmx:100799153 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2085 10 47812595 47818112 Gso10g2085 10 47812595 47818112 ECH
Gso20g1292 20 42969564 42975163 Gso10g2085 10 47812595 47818112 GST
Gso16g1497 16 35198587 35207609 Gso10g2085 10 47812595 47818112 PCT
Gso9g1116 9 32137619 32140787 Gso10g2085 10 47812595 47818112 PCT
Gso10g2085 10 47812595 47818112 Gso16g1497 16 35198587 35207609 PCT
Gso10g2085 10 47812595 47818112 Gso9g1116 9 32137619 32140787 PCT