Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2080 ATGAGGAAGCTTAAGTTTCATGAAAAGAAGCTTTTGAAGAAGGTTAATTTTTTGGAATGGAAGAGGGAAGGGGGTCACAGAGAGAACCTCATTATGCAACGCTACCATGTTACTGGACGGGACGATTACAAAAAATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCCTTTCGGGTTGATATGACTGATAAGCTTTTGGAGAAACTCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTCTGCGAACGCTTAACTGTGTCATCCTTCTGTAGGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTGCTGAGCACTTGAAAGAAGCTGTCACGTACATTGAACAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATGGGTGGATTCATCCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAATTGGATGACTATGATTTAATGAATTAA 549 0.4062 MRKLKFHEKKLLKKVNFLEWKREGGHRENLIMQRYHVTGRDDYKKYSGLCHMVQKLVNILKQMDPKDPFRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDSSKIKRKVLQYNDKLDDYDLMN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2080 182 ProSiteProfiles S4 RNA-binding domain profile. 107 173 - -
Gso10g2080 182 Pfam S4 domain 107 153 IPR002942 GO:0003723
Gso10g2080 182 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 181 IPR022801 -
Gso10g2080 182 CDD S4 107 175 - -
Gso10g2080 182 SUPERFAMILY Alpha-L RNA-binding motif 26 175 - -
Gso10g2080 182 SMART s4_6 107 170 IPR002942 GO:0003723
Gso10g2080 182 Gene3D - 107 182 IPR036986 GO:0003723
Gso10g2080 182 SMART Ribosomal_S4_2 3 106 IPR001912 GO:0019843
Gso10g2080 182 Pfam Ribosomal protein S4/S9 N-terminal domain 3 105 IPR001912 GO:0019843
Gso10g2080 182 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2080 Gso-Chr10 47773017 47775694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2080 63 148 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 33.333 5.90e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2080 K14560 - gmx:100782389 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1298 20 43010584 43013054 Gso10g2080 10 47773017 47775694 GST