Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2055 ATGGCTTCCGATCTTGAGCTTAAGGCCAAAGAGGCTTTCGAAGATGATAACTATGATCTCGCCTACGACCTCTTAACTCAGGCCATTGGTCTCAGCCCCAACAACGCAGACCTATATGCTGACCGTGCGCAAGTCAACATCAAAGTCAACAACCTCACCGAGGCTGTTTCTGATGCAAACAAGGCGATTGAGTTGAATCCTTCTCACTCAAAAGCATATTTGCGAAAAGGTACCGCATGCATCAAGCTTGAGGAATATCAGACTGCTAAGGCAGCTCTAGAGATGGGTGCTTCATTGGCTCCTGGAGATTCTAAATTTACTGATTTGATCAAAGACTGCGATGAACTGATTGCAGAAGAATCTGGTGTCATACCCATACAAGAAGAGAGCACAACACAGGGTGCTGCTACAAAAGCTGTTGAGGCAGAGAATGATCTTCCAGAGCCACCTACAGTAACCGTGGTTAAACCTAAATACAGGCATGAATTCTACCAGAAACCTGATGAAATGGTTATTACCATATTTGCAAAGGGCATTCCACGAGACAGCATTACTGTTGACTTTGGTGAACAAATATTAAGTGTTACAATTAATATCCCTTGCAAAGATGCTTATGTCTTCCAACCTCGCTTATTTGGAAAGATCATACCCTCCAAATGCCGGTATGAAGTTTTGTCCACCAAAATTGAAATTTGCCTTGCAAAAGCAGATCATATCCAATGGACATCTCTAGAATTCAACAAGGGTAGCACAGTTGCACAGAGGTTTAGTGTTTTGCCAGTTGCAAGAGGTGAAAAACCTACTTATCCATCCTCAAAACCGAAAATAACAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAGGAGAAAGAAGAAAAACTTGATGGTGATGCTGCGTTGAACAAATTTTTCCGTGATATATATCAAGATGCAGATGAGGACACAAGAAGAGCAATGAGCAAATCATTTGTGGAGTCTAATGGAACAGTACTGTCTACAAACTGGAAAGAAGTGGGATCAATGAAGGTACAGGAAAGTCCTCCTGATGGCATGGAGTTAAAGAAATGGTAA 1074 0.4181 MASDLELKAKEAFEDDNYDLAYDLLTQAIGLSPNNADLYADRAQVNIKVNNLTEAVSDANKAIELNPSHSKAYLRKGTACIKLEEYQTAKAALEMGASLAPGDSKFTDLIKDCDELIAEESGVIPIQEESTTQGAATKAVEAENDLPEPPTVTVVKPKYRHEFYQKPDEMVITIFAKGIPRDSITVDFGEQILSVTINIPCKDAYVFQPRLFGKIIPSKCRYEVLSTKIEICLAKADHIQWTSLEFNKGSTVAQRFSVLPVARGEKPTYPSSKPKITDWDKLEAQVKKEEKEEKLDGDAALNKFFRDIYQDADEDTRRAMSKSFVESNGTVLSTNWKEVGSMKVQESPPDGMELKKW* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2055 357 SUPERFAMILY TPR-like 5 113 IPR011990 GO:0005515
Gso10g2055 357 SMART tpr_5 36 69 IPR019734 GO:0005515
Gso10g2055 357 SMART tpr_5 2 35 IPR019734 GO:0005515
Gso10g2055 357 SMART tpr_5 70 103 IPR019734 GO:0005515
Gso10g2055 357 Pfam CS domain 160 235 IPR007052 -
Gso10g2055 357 Gene3D Tetratricopeptide repeat domain 1 145 IPR011990 GO:0005515
Gso10g2055 357 SUPERFAMILY HSP20-like chaperones 148 251 IPR008978 -
Gso10g2055 357 Pfam SGS domain 278 357 IPR007699 -
Gso10g2055 357 Gene3D - 157 248 IPR008978 -
Gso10g2055 357 PANTHER PROTEIN SGT1 HOMOLOG 1 357 IPR044563 GO:0051087
Gso10g2055 357 ProSiteProfiles CS domain profile. 156 245 IPR007052 -
Gso10g2055 357 ProSiteProfiles SGS domain profile. 268 357 IPR007699 -
Gso10g2055 357 CDD p23_CS_SGT1_like 162 245 - -
Gso10g2055 357 Pfam Tetratricopeptide repeat 71 101 IPR019734 GO:0005515
Gso10g2055 357 Pfam Tetratricopeptide repeat 36 69 IPR019734 GO:0005515
Gso10g2055 357 PANTHER PROTEIN SGT1 HOMOLOG ISOFORM X1 1 357 - -
Gso10g2055 357 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2055 Gso-Chr10 47569511 47573351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2055 1 101 U-box Gene Family AT3G07370 29.524 9.50e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2055 K12795 - gmx:100777554 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2055 10 47569511 47573351 Gso10g2055 10 47569511 47573351 ECH