Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2053 ATGGAATGGAACCGATCCTTGTTTCAATCCCAACACCATAGCTCTTCACTCTCACTCCAACCCTCCATGGAAGACCCCTCAGATTCCCCACCACCACCACCACCACCACCACCACAAACACCCCTAAAAACCTACAAACTAAGCGCCACCTCAATCTCCTACACCAAATCCACCACCAAACCCTCATTTACTTCTCTCTTCTTCACCCCATGCACCACCACCCCACCAACCTACATCCTCAAAGACATCTCCCTCACCGCCCTCCCCTCCCAAATCCTGGCCGTGGTGGGCCCCAGCGGCGCCGGAAAATCCACCCTCCTCGACATCCTCGCCGCCCGCACCCTCCCCTCCCACGGCACTCTCCTCCTCAACTCCGCTCCTCTCGTCCCCTCCACCTTCCGCAAACTCTCCTCCTACGTCCCCCAACACGACCACTGCCTCCCTCTCCTCACCGTCTCCGAAACCTTCCTCTTCGCCGCAAAGCTCCTAAAACCCAAAACCTCAAACCTCGCCGCCATCGTCTCCTCCCTCCTCTCCGAACTCCGACTCACGCACCTATCCAACACGCGCCTCGCGCGTGGCCTCTCCGGCGGAGAACGCAGAAGGGTCTCCATTGGCCTCTGTCTCCTCCACGATCCCGCTGTATTACTCCTCGACGAACCTACTTCGGGGCTCGACAGTACTTCGGCCTTCAAAGTCATGCGAATTCTAAAGCAAACGTGCGTCTCTCGCAACAGAACCATTATTCTCTCCATCCACCAACCCAGCTTCAAGATTCTCGCTTGCATTGATAGGATCTTGTTGCTCTCAAAAGGACAAGTTGTTCATCATGGAAGTGTTGCCACGTTGCAAGCGTTCTTGCACTCCAATGGCTTCACTGTCCCTCATCAACTCAACGCGTTGGAATATGCTATGGAGATTTTGAGCCAGTTGAATGAGGCTAAGCCTGTTACTCCACCGAGTATTCCTGAATCGCCTGAGAGATCAAGTTCAGTGATTTCGGTTTCTGATGGTGGAGTTAGGAGTAGTAGAGAGATCATAAGGTATAAAAGCTCTAGGGTTCATGAAATTTTCACTCTCTATAGCAGGTTTTGGAAGATTATCTACAGAACTAGACAACTTCTTTTGACCAACACCGCAGAAGCACTTCTCGTGGGTCTTGTGTTGGGAACTATTTATATCAATATAGGGTTTGATAAGGAAGGGATTGAGAAAAGGTTTGGTCTTTTTGCCTTCACTCTCACGTTTCTATTGTCCTCCACAACGGAAACCCTTCCTATTTTCATCAACGAGAGACCGATCTTGCTGAGAGAAACTTCGAGTGGGGTTTATAGGCTCTCGTCTTATCTCATTGCAAACACGCTTGTTTTCTTGCCCTACTTGTTCGTTGTTGCTGTTATATACTCTATCCCCGTTTATTTTTTAGTGGGTCTCTGTGCTTCGTGGCTTTCTTTTGCTTACTTTGTTTTGGTCATTTGGGTCATTGTTCTGATGGCAAACTCGTTCGTTCTCTTCTTGAGCTCTCTTGCTCCGAACTACATTGCTGGAACTTCGCTTCTAACGGTGCTTCTCGCAGCGTTTTTTCTCTTCTCTGGGTATTTTATCTCCAAGGAAAGCTTGCCAAAGTACTGGCTCTTCATGCATTTTTTCTCTATGTATAAATACGCTCTTGATGCTCTTCTCATCAACGAGTACTCGTGCTTGGTGACAAAGTGTTTGATATGGTACCAAGAGAATGAACAGTGCATGGTGACTGGTGGTGACGTGTTGCAGAAAAAAGGACTCAAAGAGAGTGAAAGGTGGACCAACGTGTACTTCTTGCTCGGGTTCTTTGTGCTGTATCGTGTGCTTTGCTTCTTGGTTTTGGTTAGAAGGGTTTCGAGATCCAAAACTTAA 1896 0.4884 MEWNRSLFQSQHHSSSLSLQPSMEDPSDSPPPPPPPPPQTPLKTYKLSATSISYTKSTTKPSFTSLFFTPCTTTPPTYILKDISLTALPSQILAVVGPSGAGKSTLLDILAARTLPSHGTLLLNSAPLVPSTFRKLSSYVPQHDHCLPLLTVSETFLFAAKLLKPKTSNLAAIVSSLLSELRLTHLSNTRLARGLSGGERRRVSIGLCLLHDPAVLLLDEPTSGLDSTSAFKVMRILKQTCVSRNRTIILSIHQPSFKILACIDRILLLSKGQVVHHGSVATLQAFLHSNGFTVPHQLNALEYAMEILSQLNEAKPVTPPSIPESPERSSSVISVSDGGVRSSREIIRYKSSRVHEIFTLYSRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFDKEGIEKRFGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLFVVAVIYSIPVYFLVGLCASWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKESLPKYWLFMHFFSMYKYALDALLINEYSCLVTKCLIWYQENEQCMVTGGDVLQKKGLKESERWTNVYFLLGFFVLYRVLCFLVLVRRVSRSKT* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2053 631 SMART AAA_5 89 273 IPR003593 -
Gso10g2053 631 Gene3D - 63 316 IPR027417 -
Gso10g2053 631 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 30 626 - -
Gso10g2053 631 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 626 - -
Gso10g2053 631 Pfam ABC transporter 80 223 IPR003439 GO:0005524
Gso10g2053 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 287 IPR027417 -
Gso10g2053 631 ProSitePatterns ABC transporters family signature. 195 209 IPR017871 GO:0005524
Gso10g2053 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 61 296 IPR003439 GO:0005524
Gso10g2053 631 MobiDBLite consensus disorder prediction 25 42 - -
Gso10g2053 631 Pfam ABC-2 type transporter 356 565 IPR013525 GO:0016020|GO:0140359
Gso10g2053 631 MobiDBLite consensus disorder prediction 1 24 - -
Gso10g2053 631 Pfam ABC-2 type transporter 253 314 IPR043926 GO:0140359
Gso10g2053 631 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2053 Gso-Chr10 47552208 47554349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2053 73 279 Calmodulin-binding Proteins AT2G36910 31.193 4.48e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2053 K05681 - gmx:100790712 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2053 10 47552208 47554349 Gso10g2053 10 47552208 47554349 ECH
Gso20g1314 20 43163893 43166002 Gso10g2053 10 47552208 47554349 GST