Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2049 ATGGAACAGAAACACGTGTTGTTGTCAGCATTGAGTGTTGGGGTTGGGTTGGGTGTGGGACTTGGATTGAGCACAGGACAAGCTGTTCAAAAATGGGTTGGAGGGAGTTGTGAGTCTGATGAGATTTCTGGGGATCAAATTGTGTTGGAGCTCAACAACAGAGTCATTGATGGGAAGAACAGCGAAGTCACATTTGATAAATTTCCTTATTACTTAAGTGAAAGAATCCGATTTGTGTTAACAAGCACTGGATATGTTTATTTAAAACAAGACTTTTCCAAGCACTTGAGGAACCTTCGTCCAGCAAGTAGAGCTATTTTGCTTTCTGGACCTGCAGAACCTTATCAGCAAAATCTTGCCCGAGCTTTAGCACATTACTTCAAATCAAAGTTACTGTTGCTAGACATTACTGACTTCTTGTTGGAGATGCAGAGGAAATATGGATGTCCCAGAAAAGAACCATGTTTTCAAAGGTCCATATCTGAGGTGACTTTGGAGAGAGTGTCTGGTCTGTTTGGTTCCTTGTCAGTCCTTCCTTCAACAGGCAGAACTAGAGGTACACTACATCGACAGAGTAGTGAAATTGAAAATTCCAGCAATCCTCCAAAGCTTCGCAGGAATGCCTCTACTGCATGTGATACGATTAGCACTTCCCAATATGGTCCGTCAGATTCAGCTCCTTTGAAGTGCACAAGCGGCTTCTGTTTTGATGAAAAGCTCTTCGTGCAGTCACTTTATAAGGTCTTGGTTTCTATCTCAGAAACCAGTTCTGTTATTTTATATATCAAGGATGTTGAGAAGCTCTTTGTTCGATCAACAAGGCTACACAATTTGTTCCAAAAGTTAATAAAGAAACTTTCAGGATCAGTGTTAATACTCGGTTCCCAGATCATTGATTCTGAAGATGATTGTACAGAAATTGATGAAAAGCTTAGTATGTTATTCCCTTACAACATTGAGATCAAACCACCTCAAGAAGACGCCCATCTTGCAAGCTGGAGAACGAAACTGATAAAGGACAAGGAAAAAAGTCTGTTTCAAGATAGCAGGAACCATATTGCTGAAGTACTTGCAGCAAATGATGTTGATTGTGATGACTTGGAAAAAGTAAACCATGCTGATACTATGCTACTCAGTAATTGCATTGAAGAGATTGTAGCGTCTGCAATTTCTCACCACCTGATGGAGACTAAACATCCAGAATACCGAAATAGAAAATTAGTTATATCACACAAGAGTTTGTCCCATGTATTGAATATTTTCCAGGAAAGTGAAAGTAATCTGGAGAATAAAGATTCAAACAAGGAGGATGCTCTTGCAACAAAGAAAGATGGCGACAATGAGTTTGAGAAGCGCATGAGAGCAGAGGTTGTGCCTGCAAATGAGATAGGGGTTACATTTGAAGATATTGGTGCATTGGATGATATTAAAGAATTACTTGAAGATGTGGTCATGCTTCCCCTCAGAAGACCAGACTTATTCAAAGGTGGGCTTCTGAAGCCTTATAAAGGAATATTGCTTTTTGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGCTTCATCAATGTCTCAATCTCTAACATCACTTCAAAATGGTTTGGGGAAGATGAAAAAAATGTCCGTGCTCTGTTTTCACTAGCAGCAAAGGTTGCTCCAACTATTATTTTTATTGATGAGGTTGATAGCATGCTTGGAAAGCGGACTAAATATGGAGAGCATGAGGCAATGAGAAAGATTAAAAATGAATTCATGGCCCACTGGGATGGAATATTGACAAAACCTGGTGAGCGAATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGGATCATGGTTGGTCTTCCATCTGCTGAGAACAGGGAAATGATCTTGAAAACTCTCCTAGCTAAGGAAAAATATGAACATATAGACTTTAATGAGCTTTCAACCATTACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCACTGCTGCTGCTTATCGACCTGTTAGAGAGGTACTTCAACAGGAGAGGTTGAAGGAAAAGGAAAAGAAGAAAACAGAAGCAGAAGTTCAAAGATCAGAAGATGCTTCTGATGCTAAAGGAGATAAAGAAGATGGAGTGATTACTTCAAGGTGTTTAAACATTCAGGAAAAGAAGAAAACTGAGGCAGAAGTTCAAAGCTCAGAAAATGCTTCTGATGCAAAAGGTGATAAAGATCACCAAGTGATTACTTTGAGGCCTTTAAACATGGAAGACATGAGACTGGCAAAGAGTCAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCAATAATGAGTGAGCTGAAGGAGTGGAATGAATTGTTTGGAGAAGGAGGTTCAAGGAAGAAGCAGCAGCTTACTTATTTCCTTTAG 2445 0.4008 MEQKHVLLSALSVGVGLGVGLGLSTGQAVQKWVGGSCESDEISGDQIVLELNNRVIDGKNSEVTFDKFPYYLSERIRFVLTSTGYVYLKQDFSKHLRNLRPASRAILLSGPAEPYQQNLARALAHYFKSKLLLLDITDFLLEMQRKYGCPRKEPCFQRSISEVTLERVSGLFGSLSVLPSTGRTRGTLHRQSSEIENSSNPPKLRRNASTACDTISTSQYGPSDSAPLKCTSGFCFDEKLFVQSLYKVLVSISETSSVILYIKDVEKLFVRSTRLHNLFQKLIKKLSGSVLILGSQIIDSEDDCTEIDEKLSMLFPYNIEIKPPQEDAHLASWRTKLIKDKEKSLFQDSRNHIAEVLAANDVDCDDLEKVNHADTMLLSNCIEEIVASAISHHLMETKHPEYRNRKLVISHKSLSHVLNIFQESESNLENKDSNKEDALATKKDGDNEFEKRMRAEVVPANEIGVTFEDIGALDDIKELLEDVVMLPLRRPDLFKGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVSISNITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGKRTKYGEHEAMRKIKNEFMAHWDGILTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKYEHIDFNELSTITEGYTGSDLKNLCTAAAYRPVREVLQQERLKEKEKKKTEAEVQRSEDASDAKGDKEDGVITSRCLNIQEKKKTEAEVQSSENASDAKGDKDHQVITLRPLNMEDMRLAKSQVAASFAAEGSIMSELKEWNELFGEGGSRKKQQLTYFL* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2049 814 Pfam ATPase family associated with various cellular activities (AAA) 505 635 IPR003959 GO:0005524|GO:0016887
Gso10g2049 814 ProSitePatterns AAA-protein family signature. 608 627 IPR003960 GO:0005524|GO:0016887
Gso10g2049 814 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 442 745 - -
Gso10g2049 814 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 736 814 - -
Gso10g2049 814 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 437 - -
Gso10g2049 814 MobiDBLite consensus disorder prediction 182 208 - -
Gso10g2049 814 SMART AAA_5 501 638 IPR003593 -
Gso10g2049 814 Coils Coil 687 714 - -
Gso10g2049 814 MobiDBLite consensus disorder prediction 737 759 - -
Gso10g2049 814 MobiDBLite consensus disorder prediction 696 722 - -
Gso10g2049 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 692 IPR027417 -
Gso10g2049 814 CDD AAA 499 636 - -
Gso10g2049 814 Gene3D - 464 636 IPR027417 -
Gso10g2049 814 Gene3D - 637 710 - -
Gso10g2049 814 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 736 814 - -
Gso10g2049 814 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 437 - -
Gso10g2049 814 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 442 745 - -
Gso10g2049 814 Pfam AAA+ lid domain 658 694 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2049 Gso-Chr10 47511406 47519157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2049 465 712 Calmodulin-binding Proteins AT3G56690 38.095 1.11e-44 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2049 - - gmx:121172906 1546.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2049 10 47511406 47519157 Gso10g2049 10 47511406 47519157 ECH
Gso20g1317 20 43197537 43205262 Gso10g2049 10 47511406 47519157 GST
Gso16g1429 16 34331147 34333063 Gso10g2049 10 47511406 47519157 PCT
Gso10g2049 10 47511406 47519157 Gso16g1422 16 34220877 34243777 PCT
Gso10g2049 10 47511406 47519157 Gso9g1039 9 29624943 29632356 PCT