Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2028 ATGCTTTGTCTCTTCCTCCTCCTCCTTCTTCTTCTCTTCACCTTCCCCTCCCTCGTTCTCACCCTCCCTTTCTTCCCCTCTGATAACCTCACCCTCTACGGTGACGCCTTCTTCACCCGCAACGCCATCACCCTCACCACCCAACACTCCAAATGCTCCTCTTCTTCCATCGGAAGAGCTTTCTTCATCTACCCCGTCCGTTTTCTTGACCCGCAAACAAACTCCACCGCCTCCTTCTCCTGCCGCTTCTCCTTCTCCATCCTCTCCTCCCCTTCTTGCCCCTCCGCCGACGGCCTCGCCTTCCTCATCGCCTCCTCCACCCACTTCCCCACCCTCTCCTCCGGTTACATGGGCCTCCCTTCCTCCTCCTTCTCCTCTTTCTTCGCCGTCGAATTCGACACCGCCTTCCACCCCTTCCTTGGTGACATCAACGATAACCACGTCGCCGTCGATGTCAACAGCCTCGCCTCCTCATTCGCCTCAGTCGACGCCGCGTCCCGAGGCGTCGACCTCAAGAGCGGGAAAATCATCACTGCATGGGTGGAGTATAGGCATGCAATGAGAATGGTACGTGTGTGGATCGGCTATTCCTCAACTAGACCCCCAACTCCGATTCTTGCTACCCAAATTGACCTTTCTGAGAGACTTGAGGACTTCATGCACGTTGGTTTCACTGCCTCCAACGGAGAAGGGTCGAGTGTTCACCTTGTTCATCATTGGCAGTTCAAGACTTTCGGCTATGATGATGATTCTCGCTCCATGGATGTCGTGGAGGAAGGTGACTGTTTCTTGTGTTATGAAGGGGATTCCAAGATGGCTCTTGGGTTGGCAGGGTTGACGGCGTTTGTGGTGTCGGGTTTGGCGGCAATGGTTGTGGTGTGTGTTTTCTTGACAAAGAATAAAGCTTGTATTAGGAAGAAGAATAAGGAAGAACAAGGGCAAAGTTGTAGGTTTCAGACGAGTAAAGTGCCAACAAGGTTGTCACTTTCTGACATTAAGTCTGCTACAATGGGGTTCAATCGAGATAGGCTTGTTGGGGAGGGTGCATCTGCAAAAGTGTATAAAGGGTATCTTCCTTTTGGAGGAGACGTGGCAGTGAAGAGATTTGAGAGAGATAACGGTTTGGATTGTTTGCACAACCCTTTTGCCACAGAGTTTGCCACCATGGTGGGTTACTTGCGGCACAAGAATTTGGTTCAGCTCAAGGGGTGGTGCTGTGAGGGGAATGAGTTGGTTCTGGTTTATGAGTTCCTCCCCAATGGGAGCCTCAATAAGGTTTTGCATAGAAACTTCAATTCTTCCATTGTTCTTTCGTGGCAGCAAAGGCTGAACATTGTTCTCGGGGTTGCTTCTGCTCTTACCTACCTTCATGAGGAGTGTGAGAGGCAGATCATTCATAGGGATGTGAAGACATGCAACATAATGCTTGATGCTGATTTCACTGCCAAGTTAGGGGATTTTGGGCTTGCGGAAGTGTATGAGCACAGTTCTAGCACGAGGGATGCTACTATACCAGCAGGGACAATGGGGTATCTTGCTCCTGAATATGTTTATTCTGGTGTTCCTACTGTGAAGACTGATGTGTACAGCTTTGGGGTGGTGGTGTTGGAAGTGGCAACTGGTAGAAAGCCTGTGGAGGATGATGGCACCGTGGTTGTGGATTTTGTGTGGGGTTTGTGGGGAAAGAGGAAGCTCATTGAAGCTGCTGATCCAAGATTGATGGGAAAATTTGATGAAAAAGAGATGGAAAGGATGTTATTGGTGGGGCTTCTTTGTGTGCACCCTGATTATGAGAAGAGGCCAAGAGTGAGAGAAGCAACAAGAATTCTTAAGAAGGAAGCACCACTTCCTTTGTTGCCAACCAGTAAACCAAGGGTGAGAATTAGGCCTATTTGTCCTGATGATGATACCTCTGAAGCACAGAGTGTTGTTGCGGATTGGCTCAGCACAGATGATGCTCCTTATTTGACCCCTAGAAGCCAGTTTTACTAG 1992 0.4965 MLCLFLLLLLLLFTFPSLVLTLPFFPSDNLTLYGDAFFTRNAITLTTQHSKCSSSSIGRAFFIYPVRFLDPQTNSTASFSCRFSFSILSSPSCPSADGLAFLIASSTHFPTLSSGYMGLPSSSFSSFFAVEFDTAFHPFLGDINDNHVAVDVNSLASSFASVDAASRGVDLKSGKIITAWVEYRHAMRMVRVWIGYSSTRPPTPILATQIDLSERLEDFMHVGFTASNGEGSSVHLVHHWQFKTFGYDDDSRSMDVVEEGDCFLCYEGDSKMALGLAGLTAFVVSGLAAMVVVCVFLTKNKACIRKKNKEEQGQSCRFQTSKVPTRLSLSDIKSATMGFNRDRLVGEGASAKVYKGYLPFGGDVAVKRFERDNGLDCLHNPFATEFATMVGYLRHKNLVQLKGWCCEGNELVLVYEFLPNGSLNKVLHRNFNSSIVLSWQQRLNIVLGVASALTYLHEECERQIIHRDVKTCNIMLDADFTAKLGDFGLAEVYEHSSSTRDATIPAGTMGYLAPEYVYSGVPTVKTDVYSFGVVVLEVATGRKPVEDDGTVVVDFVWGLWGKRKLIEAADPRLMGKFDEKEMERMLLVGLLCVHPDYEKRPRVREATRILKKEAPLPLLPTSKPRVRIRPICPDDDTSEAQSVVADWLSTDDAPYLTPRSQFY* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2028 663 Gene3D - 13 258 - -
Gso10g2028 663 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 24 628 - -
Gso10g2028 663 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 247 IPR013320 -
Gso10g2028 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Gso10g2028 663 CDD STKc_IRAK 345 612 - -
Gso10g2028 663 ProSiteProfiles Protein kinase domain profile. 339 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2028 663 PANTHER - 24 628 - -
Gso10g2028 663 Gene3D Phosphorylase Kinase; domain 1 298 417 - -
Gso10g2028 663 Gene3D Transferase(Phosphotransferase) domain 1 418 615 - -
Gso10g2028 663 SUPERFAMILY Protein kinase-like (PK-like) 324 628 IPR011009 -
Gso10g2028 663 Pfam Protein kinase domain 340 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2028 663 Pfam Legume lectin domain 25 248 IPR001220 GO:0030246
Gso10g2028 663 CDD lectin_legume_LecRK_Arcelin_ConA 27 246 IPR001220 GO:0030246
Gso10g2028 663 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Gso10g2028 663 SMART serkin_6 339 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2028 Gso-Chr10 47301314 47303371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2028 2 662 Receptor kinase-like Gene Family AT5G42120 53.890 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso10g2028 Pkinase 1.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2028 - - gmx:100783805 1271.53