Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2027 ATGGCAGATCTTGTTAGCTACAGGAATGCCGACCGTGACATCGACCAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTACTTAAATATGGTCGTAAGGGAAAACCTAAGTTTTGTCCGTTTAGACTTTCCAATGATGAATTGTCTTTAATCTGGATATCCAGTAGTGGAGAAAGAAATCTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGATATCTGTGTCCTGAGAAGGACTATCTATCTTTTTCACTTATTTATAACAACGGGAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTCAAGGCACTGATATCTTCCGGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAGTGATGGAGGCCTATATCTTGATGACAGTAGAGACTTGACATCAAATAGTCCTAGTGAAAGTTCAGCTAGTGTTTCACGTGACATCAGTTCTCCTGACGTTTCTGTTAGTCTGGCAAATACTTCTCCACAATCCTTTTACTTTGAGAGTACCTTAAATATTGAAAGGTCACATGCACCATCAAACCCATCAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCCAGTCATGGGTCTGCACCCGATGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAATGTTGTGAAAGTTGGTGCTGAGAAAAGTGCTAGTTATTTTAGCCCAAGGACAGATATTCTCCTCCCCAGGCCACTGGAGTCCAATGTGGTTTTAGATGTGCTTCAAATAGCATGTGGTGTTAAACATGCTGCTCTTGTCACAAGGCAAGGTGAACTTTTTACATGGGGTGAAGAGTCTGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGATTCAACCTCGTCTAGTTGAAGCAATGGCTTCCACAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCCGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCGAAGAGAATTGCAGGTCCACTAGAGGGGCTTCAAGTTGCTTTAGTCACTTGTGGTCCGTGGCACACAGCCTTGATAACTTCAACTGGGCAGCTCTTCACATTTGGTGATGGAACATTTGGTGTCCTAGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTATCTGGGTTGAGGACAATAGCTGTTGCTTGTGGAGTTTGGCATACTGCAGCTGTTGTAGAGGTTATTGTGACACAATCAAGTGCTAGTGTATCATCAGATAAATTGTTTACATGGGGCGATGGAGATAAAAATCGCCTTGGACACGGAGACAAGGATGCCCGGCTTGAACCAACTTGTGTATCTTTACTTATTGATTCCAATTTTCATAGAATTGCTTGCGGGCACAGTTTGACAGTAGGCCTGACAACATCCGGAGAAGTTTTTACAATGGGAAGCTCTGTTTATGGTCAGCTTGGGAATCCCCAGTCCGATGGAAAGGTGCCATGTTTGGTTAAAGACAAGCTTGCAGGAGAATCCGTTGAAGAAATTGCATGTGGGGCTTATCATGTTGCTGTTTTAACTTCCAAAAATGAAGTTTACACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGAAAAACACCGACTTTAGTTGAAGCCTTGAAAGATAGACATGTGAAATATATCGCATGTGGTTCGAACTACTCTGCCGCCATATGCCTTCATAAGTGGGTATCCGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGACACAACTGTTATAATTGTGGACTCGTGCACTGTCATTCATGTAGTTCTAGGAAAGCATTAAGAGCTTCCCTTGCTCCTAATCCTGGGAAGCCCTATCGTGTTTGTGATTCTTGTTTCGTAAAATTAATCAAGGTTGCAGAATCGGGCAATAATAATCGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAACAAGGACAGATTAGAGAAGTCTGAGCTAAGATTGACCAAGACAGCAGTCCCTTCTAATATGGATTTGATAAAGCAGCTTGATAGTAAGGCAGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCACCTCACAACCACAATCTTTGCTACAGCTCAAAGATGTTGTCTTGTCTACTGCTATTGATTTGAAGCGAACAGCTCCAAGACCTGTTCTGACACCATCTGGAGTGAGTTCCAGGTCTGTATCCCCTTTCTCTAGAAGACCAAGCCCGCCTCGTTCAGCTACACCTATTCCAACAACATCGGGACTTTCCTTCTCTAAAAGTATTACTGATAGTTTGAAGAAAACAAACGAACTTTTGAATCAGGAAGTGTTGAAGTTACGCGGTCAGGTTGAGACCCTGAGACAGAGATGTGAACTGCAAGAATTGGAGCTTCAAAGGTCAACAAAAAAGACTCAGGAAGCTATGGCACTGGCTGCCGAGGAATCTGCCAAATCTAAGGCTGCAAAGGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCCGGTGCTTATGATGCTGAAAACATCAGACCAGCTTACCTGCCAAATGGTCTGGAGCCAAATGGCATCCACTATCCAGAATTAAACGGTGAACGTCACACCAGGGCAGAGTCCATCAGTGGCTCTAGTTTGGCTTCCATAGGACTTGAATCATCCCTATTGAATAGAACCGAGGGCACTTTGCCTGGAAGCTATGGAGCTAATCTTTACCTGCAAAACCGGGGATCTGTAACCTCTAATGGGACAGATGATTACCCGAATGTTAAATTGCCAAATGGCAGCAGCATGATTCAGCCAAGCAGCAGTACTGTGTCAGATATGGTTGATGGTAGGGATTCTGGAGATTTCCAAGATGATGAGAGTGGTTTGAGATCAAGAAACACCATAGTGCCTGCTAATAGTAATCAAGTTGAGGCAGAATGGATTGAACAATATGAACCTGGTGTCTACATTACACTGGTCGCCTTGGGTGATGGAACAAGAGATCTGAAGCGAGTGCGATTCAGCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCGCGATAGGGTATACGAAAGGTACAATGTTCGAAGCACGGACAAGTCTTCCGGCCAAGCGGCACGTAGGACAGAGGGTGCTGGTTCACCTGTTTTATAA 3363 0.4457 MADLVSYRNADRDIDQALIALKKGAQLLKYGRKGKPKFCPFRLSNDELSLIWISSSGERNLKLSSVSRIIPGQRTAVFQRYLCPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDSRDLTSNSPSESSASVSRDISSPDVSVSLANTSPQSFYFESTLNIERSHAPSNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGAEKSASYFSPRTDILLPRPLESNVVLDVLQIACGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVIQPRLVEAMASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSDKLFTWGDGDKNRLGHGDKDARLEPTCVSLLIDSNFHRIACGHSLTVGLTTSGEVFTMGSSVYGQLGNPQSDGKVPCLVKDKLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRASLAPNPGKPYRVCDSCFVKLIKVAESGNNNRRNAMPRLSGENKDRLEKSELRLTKTAVPSNMDLIKQLDSKAAAKQGKKADTFSLVRTSQPQSLLQLKDVVLSTAIDLKRTAPRPVLTPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSITDSLKKTNELLNQEVLKLRGQVETLRQRCELQELELQRSTKKTQEAMALAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDAENIRPAYLPNGLEPNGIHYPELNGERHTRAESISGSSLASIGLESSLLNRTEGTLPGSYGANLYLQNRGSVTSNGTDDYPNVKLPNGSSMIQPSSSTVSDMVDGRDSGDFQDDESGLRSRNTIVPANSNQVEAEWIEQYEPGVYITLVALGDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYERYNVRSTDKSSGQAARRTEGAGSPVL* 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2027 1120 SMART fyve_4 622 691 IPR000306 GO:0046872
Gso10g2027 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Gso10g2027 1120 MobiDBLite consensus disorder prediction 786 803 - -
Gso10g2027 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Gso10g2027 1120 SUPERFAMILY PH domain-like 13 123 - -
Gso10g2027 1120 CDD FYVE_like_SF 633 686 - -
Gso10g2027 1120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 696 IPR013083 -
Gso10g2027 1120 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1103 - -
Gso10g2027 1120 CDD PH_PLC_plant-like 12 124 - -
Gso10g2027 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Gso10g2027 1120 ProSiteProfiles BRX domain profile. 1042 1097 IPR013591 -
Gso10g2027 1120 MobiDBLite consensus disorder prediction 1099 1120 - -
Gso10g2027 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Gso10g2027 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 519 568 IPR000408 -
Gso10g2027 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Gso10g2027 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 469 514 IPR000408 -
Gso10g2027 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Gso10g2027 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Gso10g2027 1120 Pfam Transcription factor BRX N-terminal domain 876 911 IPR027988 -
Gso10g2027 1120 SUPERFAMILY FYVE/PHD zinc finger 624 697 IPR011011 -
Gso10g2027 1120 Pfam FYVE zinc finger 624 689 IPR000306 GO:0046872
Gso10g2027 1120 Gene3D - 13 129 IPR011993 -
Gso10g2027 1120 Gene3D - 185 458 IPR009091 -
Gso10g2027 1120 Pfam Transcription factor regulating root and shoot growth via Pin3 1041 1096 IPR013591 -
Gso10g2027 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Gso10g2027 1120 Coils Coil 832 866 - -
Gso10g2027 1120 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Gso10g2027 1120 MobiDBLite consensus disorder prediction 783 818 - -
Gso10g2027 1120 Pfam Pleckstrin homology domain 18 123 IPR001849 -
Gso10g2027 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Gso10g2027 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Gso10g2027 1120 SUPERFAMILY RCC1/BLIP-II 235 625 IPR009091 -
Gso10g2027 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 297 IPR000408 -
Gso10g2027 1120 MobiDBLite consensus disorder prediction 992 1026 - -
Gso10g2027 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Gso10g2027 1120 PRINTS Chromosome condensation regulator RCC1 signature 281 294 IPR000408 -
Gso10g2027 1120 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Gso10g2027 1120 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Gso10g2027 1120 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Gso10g2027 1120 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Gso10g2027 1120 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Gso10g2027 1120 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Gso10g2027 1120 MobiDBLite consensus disorder prediction 992 1011 - -
Gso10g2027 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Gso10g2027 1120 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1103 - -
Gso10g2027 1120 Gene3D - 459 634 IPR009091 -
Gso10g2027 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Gso10g2027 1120 Coils Coil 881 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2027 Gso-Chr10 47281418 47289842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2027 1043 1113 Major Intrinsic Protein MIP AT1G31880 46.479 7.93e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2027 - - gmx:100783270 2143.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2027 10 47281418 47289842 Gso10g2027 10 47281418 47289842 ECH
Gso20g1329 20 43352828 43361089 Gso10g2027 10 47281418 47289842 GST
Gso16g1369 16 33315993 33326414 Gso10g2027 10 47281418 47289842 PCT
Gso2g0690 2 7236429 7245536 Gso10g2027 10 47281418 47289842 PCT
Gso10g2027 10 47281418 47289842 Gso16g1369 16 33315993 33326414 PCT
Gso10g2027 10 47281418 47289842 Gso2g0690 2 7236429 7245536 PCT