Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2023 ATGGATTTGGTGGAAGGCGTCGGAGAGAGTTCCTCGCCGCCGCGCGCCTTCAGCGGCTACAGCAACTACGACGTCCGCAACGATGTCTACAACCGCCTTCTTCAAACCGGCCACGACCAAGCCGTTTCCAACCCCGACTTCCGCGAACACTTGGAGGCTCACTTCAATCGCTTGCCACCGAGTTATGGACTCGATGTGAATATCGATAGAGCTGAAGATGTTCTGTTGCATCAATCCCTTCTTGCTTTGGCAAAGGACCCTCACAAGCGCCCTGTATACCATATACGCTTCCTTGAGAATATTTCAACTAGAACAGATAGTGAAGATCAACAAATTTTAAGTACTCATTATAGCCCAGGATCATCTTCCCATGCAACAAATGGGGGAGCTGTATCACCTGGTAAAAGTAAGATGAGGGATATTGCAAATGAGTTTGAGCCTTGCTCGAAGCTTGAGGACCTAAATTTGGATGTTAGAAAGAACTCAAAGGAGACAGAGGAAAAATTTCTCTCTGACAATTTTTTCCAGAGGCTTGAACATTCAAGTGTCCCCGTTCATGAAATAATATTTTCCACTGTTGACAAGCCAAAGCTGTTAAGCCAGCTGTCCGCTTTGCTGTCTGATATTGGACTTAACATCCGTGAAGCTCATGTTTTCTCCACAACTGATGGCTATTCCCTTGACGTGTTTGTGGTGGATGGATGGCCAGTAGAGGAAACAGATGATTTGTATGATGCTATGGAAAAAGCTGTATCAAGAAGCGAGGGATCATGGTCTCGTTCTTTAAAATCTCATTCAGCTGTGGAGAAAGCCTTAGCAACAGAAGGAAAATCAGGAGATTGGGAAATAGATAGGAAGTTGCTAAAGTTAGGAGAAAAAATAGCATCTGGATCCTCTGGAGATTTGTATCGTGGAGTTTATCTCGGTGAAGATGTTGCTGTTAAGGTTCTGAGATCGGAGCAATTGAATGATGCCTTAGAGGATGAGTTTGCTCAAGAAGTGGCAATTCTGAGGCAGGTGCATCATAAAAATGTTGTTCGTTTCATTGGTGCATGTACAAAGTGTCCACATTTGTGCATAATAACAGAGTATATGCCCGGAGGAAGTCTGTACGATTACGTGCACAAAAATCATAATGTCTTGGAGCTGTCTCAATTACTAAAATTTGCAATTGATGTCTGCAAGGGTATGGAGTATTTGCATCAAAGCAATATAATTCACAGAGATCTGAAGACGGCTAATTTGCTGATGGATACACACAATGTTGTTAAAGTCGCAGATTTTGGAGTTGCTCGGTTCCTAAATCAAGGGGGAGTGATGACAGCAGAAACTGGGACATATAGATGGATGGCACCAGAGGTTATAAATCATCAGCCCTATGATCAGAAAGCAGACGTATTCAGTTTTTCCATCGTACTGTGGGAATTAGTGACGGCAAAGGTACCATATGACACCATGACTCCACTACAAGCTGCCTTGGGTGTGAGACAGGGTCTGCGGCCAGAACTTCCGAAGAATGGGCACCCTAAATTATTAGAGTTGATGCAAAGATGTTGGGAAGCAATTCCAAGCCACCGTCCATCCTTTAATGAGATAACTGCTGAACTTGAAAATCTTTTGCAAGAAATGGAGAAAGATTCAGAAGCGAATGCTGTAGAGTTTTTTTCACGTTCCCTTGTGGCACCGAGGGAGAAAGGAGTTCACAGAAATCGTGACCAATACAAAGTGAGAAAATGTAAAGAGGCATACTAA 1752 0.4349 MDLVEGVGESSSPPRAFSGYSNYDVRNDVYNRLLQTGHDQAVSNPDFREHLEAHFNRLPPSYGLDVNIDRAEDVLLHQSLLALAKDPHKRPVYHIRFLENISTRTDSEDQQILSTHYSPGSSSHATNGGAVSPGKSKMRDIANEFEPCSKLEDLNLDVRKNSKETEEKFLSDNFFQRLEHSSVPVHEIIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEETDDLYDAMEKAVSRSEGSWSRSLKSHSAVEKALATEGKSGDWEIDRKLLKLGEKIASGSSGDLYRGVYLGEDVAVKVLRSEQLNDALEDEFAQEVAILRQVHHKNVVRFIGACTKCPHLCIITEYMPGGSLYDYVHKNHNVLELSQLLKFAIDVCKGMEYLHQSNIIHRDLKTANLLMDTHNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPKNGHPKLLELMQRCWEAIPSHRPSFNEITAELENLLQEMEKDSEANAVEFFSRSLVAPREKGVHRNRDQYKVRKCKEAY* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2023 583 Gene3D Transferase(Phosphotransferase) domain 1 366 581 - -
Gso10g2023 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Gso10g2023 583 SUPERFAMILY ACT-like 186 254 IPR045865 -
Gso10g2023 583 MobiDBLite consensus disorder prediction 116 130 - -
Gso10g2023 583 MobiDBLite consensus disorder prediction 116 135 - -
Gso10g2023 583 SUPERFAMILY Protein kinase-like (PK-like) 280 548 IPR011009 -
Gso10g2023 583 CDD STKc_MAP3K-like 294 536 - -
Gso10g2023 583 Gene3D Phosphorylase Kinase; domain 1 277 365 - -
Gso10g2023 583 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 547 - -
Gso10g2023 583 ProSiteProfiles Protein kinase domain profile. 288 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2023 583 ProSiteProfiles ACT domain profile. 187 267 IPR002912 -
Gso10g2023 583 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 10 547 - -
Gso10g2023 583 Coils Coil 529 549 - -
Gso10g2023 583 SMART serkin_6 288 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2023 583 Pfam Protein tyrosine and serine/threonine kinase 288 536 IPR001245 GO:0004672|GO:0006468
Gso10g2023 583 PRINTS Tyrosine kinase catalytic domain signature 362 375 IPR001245 GO:0004672|GO:0006468
Gso10g2023 583 PRINTS Tyrosine kinase catalytic domain signature 399 417 IPR001245 GO:0004672|GO:0006468
Gso10g2023 583 PRINTS Tyrosine kinase catalytic domain signature 445 455 IPR001245 GO:0004672|GO:0006468
Gso10g2023 583 PRINTS Tyrosine kinase catalytic domain signature 464 486 IPR001245 GO:0004672|GO:0006468
Gso10g2023 583 PRINTS Tyrosine kinase catalytic domain signature 507 529 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2023 Gso-Chr10 47220533 47230777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2023 24 543 MAP Kinase Kinase Kinase AT2G17700 50.278 6.55e-177 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso10g2023 PK_Tyr_Ser-Thr 2.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2023 - - gmx:100782737 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2023 10 47220533 47230777 Gso10g2023 10 47220533 47230777 ECH
Gso20g1333 20 43412609 43422390 Gso10g2023 10 47220533 47230777 GST