Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2019 ATGGGGAAGAAGAAGCCGACGGCGAGGGACGAAGAGAACGCGTCGCAGCAAGGCGGCGGCGGGAAATCGAAGAAGAAGGCGGTTGTCATCGACGACGATGAGTACTCCGTCGGAACTGAGCTCTCCGAGGAGCAGGCACCGGCGTCAGAGGAGAAACCCGCCGCGGCGGGAAAGAAGAAAGGTAAGAAAGGTAATGCTAAAGCTAAGAACAATGATGATGATGTTGATGAGGATGAGGATGTTTCTGGAATTGTGTTTGCTGGGAAGAAGAAGGGGAAGAATAAGAAAGGTGGTGGGAGCAGTGCGTTCACTGCTTCTGGCTTTGATTTGCTTGGTGACGAGGAAGATGATGATGAAGAGAAATCTGGGTTGACCGGTGAGGTTGATGGTGAGGAAGAGGATGAACCTGTGGTTAGTTTTACGGGGAAGAAGAAGTCATCCAAGAAAGGAGGTGGTAGTTTGTTCAGTGCATCTGCTTTTGATGATGGTGAGGAGGAGGAGGATGAGACAGTGATTAGTTTTTCTGGCAAGAAGAAGTCCTCTAGAGGTTCGAAGAACTCTGCCTCGGCTTTTGATGCTATTGATGATGATGCGGATGGTAAGGTGGTGGATGATAAGAATGACGATGTTGATGATGATGATGAGCCTGTTATTTCTTTCACTGGGAAGAAGAAGTCTTCCAAAGGGGGTAAGAAGGGTGGTTCTGTGTTTTCGGCTGCTGTTCTCGGTGAGATTGATGACGATGAGGAGAATAAGGATGATGGTGGTGGTGATGATGATGATGATATTGGACCGATCACTTTCTCTGGTAAGAAAAGGAAATCTTCCAAAAAGGCTGCTAATTCCGTTAGCAAAGGTGCTTCTGTTGAGGAAGGTGATGACAAGGATGAGGATGATGTTTCTTTAGTTGCATTTTCAGGTAAAAAGAAGTCTTCTAAAAAGAAGGGCAGTAGTGCTGCTGCCAAAGCGAGTGATGAAAATGTGGATGTAGTGGAGCCTGAGGCACCCAGTGTTGGTAGTACTGATGCTGGCAACAGCAATGTAAATAAGAGTGAAGAGGTCGCTGGAAATTCTAAAAATAAAAAGAAGAATAAGAAGAAGAGTGGAAGAACTGCTCAAGAGGAGGAAGATTTGGACAAACTTCTTGCAGAGCTTGGTGAGACCCCTCCTGTACCCAAACCCACAACTCTACCCCAGGATGATAAAGTTCAGCCTATTCCTGAAGTAGTACCTGTTGCTGATGCTTCCGGGCAAAAGGAAGGTGAAGAGGAGACTGTAGAGACAGCTGCTGCAAAGAAGAAGAAGAAGAAAAAGGAAAAGGAAAAGGAGAAGAAGGCAGCTGCGGCAGCATCAGCCGTAGGAACTGCACCAGAAAATGGAACAGCAGAAGATAAAGCTGAGGTAATTGAACCGAAGAAGAATGATTCAAAGGCTAAAAAAGCGGCTGATAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTAGCTCGAAGACAAGAGGCTGAAGAAAGGAAGAAAAGAGAAGAGGAGGAAAGGTTAAGGAAGGAGGAAGAGGAGCGTCGTAAGCAAGAGGAACTTGAGAGGCAAGCAGAAGAGGCTAGACGCAGAAAGAAGGAAAGAGAAAAGGAGAAACTCCAGAAAAAAAAGCAAGAAGGTAAACTGTTAACTGGTAAGCAGAAGGAAGAAGCCCGCCGTCTGGAGGCAATGAGGAGGCAGATTCTCAATAACACAGGGGGCATGACTCTCCCTGGTGGGGACTCTGGTGCTCCACCCAAAAAACCCATATATCAAACGAAGAAGGTAAAACCAAATAATCGTAATCAGAATGGTGCTGCTGCTGCTGCTCCTGCTCAGACTGCTGAAACTGTTGAAGCAAAGGAGACTGATGCTGACCTTGCTTCAGAGGAACCAGAAAAGATTGAAGAAGTGGAGTCGGTCCAGGTGGATGACAAAGTTGAACTTCTTGTAGCTGATGAAGATGATGGGGCGGAAGATGATGACGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTGAATAACAAAGGTGCATTTGCTGATGAAGAGGTTGACTCAGAGCCTAAACCTATCGTCAAGGAGATTAAAAATGCTGTACCTGCTCAGAATGCTGGTGCTACTAAGCCTGTGGTTGAAGAAATTGAAAATGGAAAGCAGGCTAAGCCTCACTTGAATAGGGAACCAAGAAAGTCTGCTGTGCCTCCTAAGCCTAGTGATGAGAACCTCCGATCCCCAATTTGCTGTATCATGGGGCATGTCGATACTGGCAAAACCAAGCTGCTGGATTGTATTCGAGGTACTAATGTTCAGGAAGGTGAGGCTGGCGGCATCACACAACAGATTGGTGCTACATACTTCCCTGCTGAGAACATACGTGAAAGAACAAAGGAACTGAAAGCTGATGCAAAGCTGAAAGTTCCCGGTCTACTGGTTATTGATACCCCAGGGCATGAGTCATTTACTAACTTGAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGGTTAGAGCAACAAACAATAGAATCACTAAATCTATTAAAAATGAGGAATACAGAATTCATTGTTGCCTTGAATAAGGTTGACAGGCTTTATGGGTGGAAAACATGTCGCAATGCTCCAATTGTTAAAGCAATGAAGCAGCAGACTAAGGATGTCCAAAATGAGTTTAATATGAGGCTCACTCAGATTATTACTGAATTCAAAGAACAAGGGCTGAATACCGAGTTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATTCCCGATTTGTTATTACTATTGATTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGCACTGTTTTAGAGGTGAAGGTAGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTTGTCTGCGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCGATGAAGGAACTTCGTGTCAAGGGAACATATCTTCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAAATCACTGCCCAGGGCCTTGAACATGCCATTGCCGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATGTTAAAGAATCAGCCATGGAAGATATGCGGTCTGTCATGAGCAGGATTGACAGGACTGGTGAGGGTGTTTGTGTACAGGCATCTACCCTTGGCTCCTTGGAAGCATTACTGGAGTTTTTGAAAACTCCAGAAGTGAGTATCCCAGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAAGGCCAGTGTAATGCTTGAAAAAAAGCGAGAGTATGCAGCTATATTGGCATTTGATGTCAAAGTTACTCCTGAGGCTAGGGAATTGGCAGATGAATTGGGAGTGAAGATATTTATTGCTGATATCATTTATCATCTGTTTGACCAATTTAAAGCTTATATTGACAACATTAAGGAGGAGAAAAAGAGAGAAGCTGCTGATGAGGCAGTCTTCCCATGTGTTATGAGTATCTTACCAAATTGCATTTTCAACAAGAAGGACCCAATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAAAGATTGGGACTCCAATTTGCATTCCTTCTAGAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCATAAACCTGTTGATTATGCAAAGAAGGGACAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAAGAGCAACAAAAAATGTTCGGGAGGCATTTTGAGATTGATGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATACTCAAAACTAATTATCGGGATGAACTAAATATGGAGGAGTGGAGGTTGGTTGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4035 0.4347 MGKKKPTARDEENASQQGGGGKSKKKAVVIDDDEYSVGTELSEEQAPASEEKPAAAGKKKGKKGNAKAKNNDDDVDEDEDVSGIVFAGKKKGKNKKGGGSSAFTASGFDLLGDEEDDDEEKSGLTGEVDGEEEDEPVVSFTGKKKSSKKGGGSLFSASAFDDGEEEEDETVISFSGKKKSSRGSKNSASAFDAIDDDADGKVVDDKNDDVDDDDEPVISFTGKKKSSKGGKKGGSVFSAAVLGEIDDDEENKDDGGGDDDDDIGPITFSGKKRKSSKKAANSVSKGASVEEGDDKDEDDVSLVAFSGKKKSSKKKGSSAAAKASDENVDVVEPEAPSVGSTDAGNSNVNKSEEVAGNSKNKKKNKKKSGRTAQEEEDLDKLLAELGETPPVPKPTTLPQDDKVQPIPEVVPVADASGQKEGEEETVETAAAKKKKKKKEKEKEKKAAAAASAVGTAPENGTAEDKAEVIEPKKNDSKAKKAADKKVPKHVREMQEALARRQEAEERKKREEEERLRKEEEERRKQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRRQILNNTGGMTLPGGDSGAPPKKPIYQTKKVKPNNRNQNGAAAAAPAQTAETVEAKETDADLASEEPEKIEEVESVQVDDKVELLVADEDDGAEDDDEDEWDAKSWDDVNLNNKGAFADEEVDSEPKPIVKEIKNAVPAQNAGATKPVVEEIENGKQAKPHLNREPRKSAVPPKPSDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAMKQQTKDVQNEFNMRLTQIITEFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLIQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKESAMEDMRSVMSRIDRTGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVMSILPNCIFNKKDPIVLGVDILEGILKIGTPICIPSREFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDELNMEEWRLVVKLKNLFKIQ* 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2019 1344 Gene3D - 1096 1200 IPR036925 -
Gso10g2019 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 752 1043 IPR027417 -
Gso10g2019 1344 Gene3D Translation factors 1207 1344 - -
Gso10g2019 1344 MobiDBLite consensus disorder prediction 463 571 - -
Gso10g2019 1344 PRINTS GTP-binding elongation factor signature 756 769 IPR000795 GO:0003924|GO:0005525
Gso10g2019 1344 PRINTS GTP-binding elongation factor signature 820 830 IPR000795 GO:0003924|GO:0005525
Gso10g2019 1344 PRINTS GTP-binding elongation factor signature 836 847 IPR000795 GO:0003924|GO:0005525
Gso10g2019 1344 PRINTS GTP-binding elongation factor signature 872 881 IPR000795 GO:0003924|GO:0005525
Gso10g2019 1344 Coils Coil 419 450 - -
Gso10g2019 1344 MobiDBLite consensus disorder prediction 656 676 - -
Gso10g2019 1344 MobiDBLite consensus disorder prediction 725 746 - -
Gso10g2019 1344 MobiDBLite consensus disorder prediction 243 261 - -
Gso10g2019 1344 TIGRFAM small_GTP: small GTP-binding protein domain 757 882 IPR005225 GO:0005525
Gso10g2019 1344 MobiDBLite consensus disorder prediction 417 434 - -
Gso10g2019 1344 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1344 IPR015760 -
Gso10g2019 1344 Coils Coil 486 557 - -
Gso10g2019 1344 MobiDBLite consensus disorder prediction 368 383 - -
Gso10g2019 1344 Gene3D Translation factors 975 1095 - -
Gso10g2019 1344 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 752 968 IPR000795 GO:0003924|GO:0005525
Gso10g2019 1344 CDD IF2_aeIF5B_IV 1215 1310 - -
Gso10g2019 1344 MobiDBLite consensus disorder prediction 339 354 - -
Gso10g2019 1344 Gene3D - 746 974 IPR027417 -
Gso10g2019 1344 MobiDBLite consensus disorder prediction 602 617 - -
Gso10g2019 1344 MobiDBLite consensus disorder prediction 110 135 - -
Gso10g2019 1344 MobiDBLite consensus disorder prediction 725 749 - -
Gso10g2019 1344 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1344 - -
Gso10g2019 1344 SUPERFAMILY Translation proteins 1211 1343 IPR009000 -
Gso10g2019 1344 MobiDBLite consensus disorder prediction 626 655 - -
Gso10g2019 1344 CDD aeIF5B_II 976 1086 - -
Gso10g2019 1344 Pfam Elongation factor Tu GTP binding domain 756 964 IPR000795 GO:0003924|GO:0005525
Gso10g2019 1344 CDD IF2_eIF5B 755 965 - -
Gso10g2019 1344 MobiDBLite consensus disorder prediction 1 679 - -
Gso10g2019 1344 Pfam Elongation factor Tu domain 2 991 1066 IPR004161 GO:0005525
Gso10g2019 1344 Pfam Translation-initiation factor 2 1080 1193 IPR023115 -
Gso10g2019 1344 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1077 1206 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2019 Gso-Chr10 47175207 47185226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2019 211 1344 Eukaryotic Initiation Factors Gene Family AT1G76810 65.743 0.0 1215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2019 K03243 - gmx:100814640 2053.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2019 10 47175207 47185226 Gso10g2019 10 47175207 47185226 ECH
Gso20g1336 20 43454785 43464772 Gso10g2019 10 47175207 47185226 GST