Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2015 ATGGAAGGGAATTTGCCACAGGGAGGTATAATTCAAGGTGGGACTTCTTTTGGTGGCTTTGATTTGCCGGGATCAATTCGGGTTCAGCATCAAGCACAACATCCCCATTCCATGCATCAACATCAAACTCATCCGCGACAAGGGTCTTCTGTACATTCCGCCGTTCATGATGGTTTTCCACTTACAATGGGAACCATGCAGAACTGTGACCAAACCATTTCATTGGCTGACTTTAGTAAAGGAGACAGAAGTAAAAACTCGGCGAGTGAGGAAGACGAGCCGAGCTATACCGAGGATGGTGTTGATTGTCACCATGAAACAACTAGAGGGAAGAAAGGATCACCTTGGCAGCGTGTGAAGTGGACTGATAAGATGGTAAAGCTTCTGATAACAGCTGTTTCTTATATAGGTGAGGATGTAACTGCTGATGGTGGTAGCAGCGGAAGAAGAAAGTTTGCGGTCTTACAGAAGAAGGGTAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAAAGGGGTTATCATGTTTCACCTCAGCAATGTGAGGATAAATTTAATGACCTTAATAAAAGGTATAAAAAGCTTAATGATATGCTAGGGAGGGGCACTTCTTGTCAGGTTGTTGAAAATCCTGTGCTGTTGGATGTAATAGATTTTCTTTCTGAGAAAGAAAAGGACGACGTTCGGAAAATATTGAGTTCAAAACACTTGTTCTATGAAGAGATGTGTTCTTATCATAATGGCAACAGGTTGCATTTACCCCATGATCCTGCATTGCAACGTTCACTGCAGTTAGCTCTCCGAAATAGAGATGATCATGATGATGATATGAGAAGGTCCCATCATGATGAAGATGATCAAGATGTGGAAATTGATGATCATGATGACTTTGAAGAGAATTGTGCTTCTCATGGTGATAGTAGAGGAATATATGGGCCATTAGGTGGATCTATGAAGAAATTGAAACAATGCCAAGGCCAAGAAGATGCTAATACTTTTGGTAACTCTTTAAATTGTCAGGACTACAACAAAAGTTCATATCCCCATGGACAGATGATCCCATCTGATGTGAATCAAGGTTTACCTGAAGGCATGAAAGCAGCTTGGTTACAGAAGCAATGGGTTGAATCTCGCACACTTCAGTTAGAAGAACAAAAGCTACAAATTCAGGTCGAGATGCTGGAACTAGAGAAACAGAGATTCAAGTGGCAGAGGTTTAGTAAGAAAAAGGATCGGGAGTTGGAGAAGCTGAGTCTAGAAAATGAAAGAATGAAGCTTGAAAATGAACGGATTTCTTTAGAACTGAAGCGAAAGGAAATGGGCACTGGCTTTAAATAG 1335 0.4142 MEGNLPQGGIIQGGTSFGGFDLPGSIRVQHQAQHPHSMHQHQTHPRQGSSVHSAVHDGFPLTMGTMQNCDQTISLADFSKGDRSKNSASEEDEPSYTEDGVDCHHETTRGKKGSPWQRVKWTDKMVKLLITAVSYIGEDVTADGGSSGRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPVLLDVIDFLSEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDDDMRRSHHDEDDQDVEIDDHDDFEENCASHGDSRGIYGPLGGSMKKLKQCQGQEDANTFGNSLNCQDYNKSSYPHGQMIPSDVNQGLPEGMKAAWLQKQWVESRTLQLEEQKLQIQVEMLELEKQRFKWQRFSKKKDRELEKLSLENERMKLENERISLELKRKEMGTGFK* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2015 444 Coils Coil 376 398 - -
Gso10g2015 444 MobiDBLite consensus disorder prediction 77 116 - -
Gso10g2015 444 Gene3D - 121 193 - -
Gso10g2015 444 PANTHER FACTOR, PUTATIVE-RELATED 1 443 - -
Gso10g2015 444 MobiDBLite consensus disorder prediction 1 63 - -
Gso10g2015 444 PANTHER F16F4.11 PROTEIN-RELATED 1 443 - -
Gso10g2015 444 Coils Coil 406 438 - -
Gso10g2015 444 MobiDBLite consensus disorder prediction 270 286 - -
Gso10g2015 444 MobiDBLite consensus disorder prediction 270 291 - -
Gso10g2015 444 MobiDBLite consensus disorder prediction 83 116 - -
Gso10g2015 444 MobiDBLite consensus disorder prediction 30 50 - -
Gso10g2015 444 Pfam Myb/SANT-like DNA-binding domain 118 244 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2015 Gso-Chr10 47147373 47149626 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso10g2015 Myb_DNA-bind_4 5.2e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2015 - - gmx:100812134 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2015 10 47147373 47149626 Gso10g2015 10 47147373 47149626 ECH
Gso20g1340 20 43492659 43494954 Gso10g2015 10 47147373 47149626 GST
Gso16g1345 16 32976316 32978507 Gso10g2015 10 47147373 47149626 PCT
Gso10g2015 10 47147373 47149626 Gso16g1345 16 32976316 32978507 PCT