Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2013 ATGGAGCTTGGAGACACTACCACAGTGATGGAAACGTCGTCCGGTGAGGCTGTGGCGGCGCATGGCGGTGGCGAGGTGATTATGATGGATGCGAATTCCGGTGAAGAAGAGAATAATAATCATAATAATAAAGGAAAATTAGAAGAGGGTGGTGGAGAAGAAGAAGAAGGTGACAATAAGATCAACAACTCATGCGGTGGAAACAGATGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCCGATATGGATGTTGTGTTTCGAGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTGCAAGGAAACTATCAGAACTGGGTTACCACCGAAGCGCTAAGAAGTGCAAGGAGAAATTCGAGAATGTGTACAAGTACCACAAAAGAACCAAAGAGGGCAGAAGTGGGAAACACGAGGGAAAAACCTACAAATTTTTTGATCAATTACAAGCTCTTGAGAATCAATTCACAGTCTCTTCTTACTCGCCAAAACCACAACCCACTTTGGCAACAGCAACAACAACAACAAACACAATAACATTACCACCCCCAACCAGGCCAAGTGCCATAACACCAATCTCTTATGTCACCACCACTGTTCCGTCCACAAACCCTACAATCATATCTCCTTCACCACCACAACCACCAACCAATGCCACCACGACAACCACAATCACTTCTCCAACAGTAGTAACCAACCCTAGAAACCCTCCACAACCCAACAACAACAACAACAGCAATAACATCCCTTACTCTTTGCCCAACATGAACAACCTCTTCTCAACAACTTCAACTTCTTCTTCCACGGCCTCGGATGAGGACTTGGAAGAGAAGTACCGTAAGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACGAGGCAAGTCTTGGCCAAGCAAGAGGAAATGCAGAAGAGGTTCCTGGAAGCCATTGACAATAGGGAGAGAGAACAAGTGGCTCAACAAGAGGCTTGGAGGATCCAAGAAATGGCAAGGATCAATAGAGAACACGAACTTCTTGTCCAAGAAAGATCAACTGCCGCAGCCAAAAATGCTGCAGTTATTGCTTTTTTGCAACAGTTATCTGGTCAGCACCAAAATTCCACAACACAAGCCAATTTCCCTCAACAACCACCTCCACAAAAAGTTACAATAGTACAACCACCACCACAACAAGCTCCACAACCACAAGCTCCATTGGTGTTGTCAAATAGTGACAACATGGAGATTCAGAAAATGAATAATGGTCACAGTGTTGTTACTGCTACTGTTACTGCTACTGCTACTCCTACTCCTACTACTACTTTCGTTGCTGCTGCTACTGCTATTACTACTACTCCTTCTTCATTGAGTTCTTTATCTTCTTCTAGGTGGCCAAAGACAGAAGTTCATGCTTTGATAAGACTGAGGACAAGTCTTGAAACCAAGTACCAAGAAAATGGACCAAAGGCTCCATTGTGGGAGGATATATCAGCAGGAATGCTGAGGCTCGGGTACAACAGGAGTGCCAAGAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAGGAGAGCAACAAGCAAAGGCGCGAGGATAGTAAGACATGTCCCTATTTTAATGAACTTGAAGCTTTATACAAAGAAAAGAGCAAGACTCAGAACCCCTTTGGCGCTTCGTTCCACAACATGAAGCCACATGAGATGATGGAGCCATTGATGGTGCAACCCGAGCAGCAATGGAGACCTCCCTCTCAGTACGAACAAGGTGCAGCGAAGGAGAACAATAATAATGAAAGAAAAGAAAGAGAGGAGGAGGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAGGATGAAAATGAAGAGGGAGATCTAGAGAGTGTGGAAGATGAAGGAGGTAACCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACCGTTGAATGA 1953 0.4439 MELGDTTTVMETSSGEAVAAHGGGEVIMMDANSGEEENNNHNNKGKLEEGGGEEEEGDNKINNSCGGNRWPRQETLALLKIRSDMDVVFRDSSLKGPLWEEVARKLSELGYHRSAKKCKEKFENVYKYHKRTKEGRSGKHEGKTYKFFDQLQALENQFTVSSYSPKPQPTLATATTTTNTITLPPPTRPSAITPISYVTTTVPSTNPTIISPSPPQPPTNATTTTTITSPTVVTNPRNPPQPNNNNNSNNIPYSLPNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDNREREQVAQQEAWRIQEMARINREHELLVQERSTAAAKNAAVIAFLQQLSGQHQNSTTQANFPQQPPPQKVTIVQPPPQQAPQPQAPLVLSNSDNMEIQKMNNGHSVVTATVTATATPTPTTTFVAAATAITTTPSSLSSLSSSRWPKTEVHALIRLRTSLETKYQENGPKAPLWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFNELEALYKEKSKTQNPFGASFHNMKPHEMMEPLMVQPEQQWRPPSQYEQGAAKENNNNERKEREEEEEDEEEEEEEEEDENEEGDLESVEDEGGNRYEIATNKLSSVDTVE* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2013 650 CDD GT1 68 133 - -
Gso10g2013 650 Pfam Myb/SANT-like DNA-binding domain 68 154 IPR044822 -
Gso10g2013 650 Pfam Myb/SANT-like DNA-binding domain 458 545 IPR044822 -
Gso10g2013 650 PANTHER - 3 640 - -
Gso10g2013 650 MobiDBLite consensus disorder prediction 220 272 - -
Gso10g2013 650 MobiDBLite consensus disorder prediction 383 398 - -
Gso10g2013 650 SMART sant 66 128 IPR001005 -
Gso10g2013 650 SMART sant 456 518 IPR001005 -
Gso10g2013 650 MobiDBLite consensus disorder prediction 368 398 - -
Gso10g2013 650 MobiDBLite consensus disorder prediction 206 281 - -
Gso10g2013 650 MobiDBLite consensus disorder prediction 577 650 - -
Gso10g2013 650 ProSiteProfiles Myb-like domain profile. 452 516 IPR001005 -
Gso10g2013 650 ProSiteProfiles Myb-like domain profile. 68 126 IPR001005 -
Gso10g2013 650 MobiDBLite consensus disorder prediction 37 60 - -
Gso10g2013 650 Gene3D - 70 131 - -
Gso10g2013 650 Gene3D - 460 521 - -
Gso10g2013 650 MobiDBLite consensus disorder prediction 578 592 - -
Gso10g2013 650 MobiDBLite consensus disorder prediction 1 68 - -
Gso10g2013 650 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 3 640 - -
Gso10g2013 650 MobiDBLite consensus disorder prediction 602 628 - -
Gso10g2013 650 CDD GT1 459 523 - -
Gso10g2013 650 MobiDBLite consensus disorder prediction 368 382 - -
Gso10g2013 650 Coils Coil 588 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2013 Gso-Chr10 47106177 47109721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2013 66 579 Trihelix Transcription Factor Family AT1G76890 47.300 1.75e-143 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso10g2013 Myb_DNA-bind_4 2.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2013 - - gsj:114370603 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2013 10 47106177 47109721 Gso10g2013 10 47106177 47109721 ECH
Gso20g1342 20 43540974 43544457 Gso10g2013 10 47106177 47109721 GST
Gso16g1343 16 32920226 32923238 Gso10g2013 10 47106177 47109721 PCT
Gso2g0673 2 7013579 7016575 Gso10g2013 10 47106177 47109721 PCT
Gso10g2013 10 47106177 47109721 Gso16g1343 16 32920226 32923238 PCT
Gso10g2013 10 47106177 47109721 Gso2g0673 2 7013579 7016575 PCT