Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2000 ATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGTGAAGGCATTCCCCAAGGATGACCCATCCAAGGCACCCAAGCTCACTGCATTCTTGGGTTACAAGGCCGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAAGCTTCACAAGAAGGAAACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCTCCGAACATTGAACACTGTCTGGGCTCAGCATTTGAGTGAGGAATTGAAACGTAGGTTCTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCCTTCACCAAGTACTCTAAGCAGTATGAAACTGAGGAGGGAAAGAAAAACATTGAGGCGCAGCTGGAGAAACTGAAGAAGTATGCTACTGTGGTTCGTGTTTTGGCTCACACTCAGATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGTAGTATTGCACAAAAGGTGGACTTTGCATACAGTTTCTTTGAGAAACAGGTTCCTATTGATGCAGTGTTCCAGAAGGATGAGATGATTGACATCATTGGTGTGACCAAGGGTAAAGGTTATGAGGGTGTTGTCACTCGTTGGGGTGTTACCCGCCTTCCCCGTAAGACTCACAGAGGTTTGAGGAAGGTTGCTTGTATTGGTGCCTGGCATCCTGCAAGAGTTTCATTCACTGTTGCCAGGGCTGGTCAGAATGGATACCACCACCGAACTGAGTTGAACAAGAAGGTTTACAAGCTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGGACCGAGAAAGACATTACCCCAATGGGTGGTTTCCCTCACTATGGTGTTGTTAAGGATGATTTTATCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAGAGGGTCATTACATTGCGTCAATCCCTCCTTAAGCAGACTTCTCGTGTTGCTCTTGAGGAGATCAAACTCAAGTTTATCGATACCTCTTCAAAGTTTGGGCATGGTCGCTTCCAGACCACACAGGAGAAGCAGAAGTTCTTTGGACGCCTCAAAGCATAA 1170 0.4658 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKAPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEELKRRFYKNWCKSKKKAFTKYSKQYETEEGKKNIEAQLEKLKKYATVVRVLAHTQIRKMKGLKQKKAHIMEIQVNGGSIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYKLGKAGDESHSALTEFDRTEKDITPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2000 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Gso10g2000 389 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 1 389 - -
Gso10g2000 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Gso10g2000 389 Gene3D - 83 207 - -
Gso10g2000 389 Gene3D Translation factors 44 385 - -
Gso10g2000 389 MobiDBLite consensus disorder prediction 1 37 - -
Gso10g2000 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Gso10g2000 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Gso10g2000 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Gso10g2000 389 TIGRFAM L3_arch: ribosomal protein uL3 8 368 IPR019928 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2000 Gso-Chr10 46984974 46988115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2000 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 85.788 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2000 K02925 K10999 gmx:100806786 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1354 20 43663668 43666706 Gso10g2000 10 46984974 46988115 GST