Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1998 ATGATGTCACGTTTTATGAATGCTCCTTCCTCTCCAGGATTGTCTCCTCTGTTTGGCGTTGGCCACAAGAGAGCCCGTGAAGACGACACGGGTGCGGGTGCAAGTGTGGGTCTTGGTGTTGTTGCAGCAGCTTCTTCACAAACACAAGGGAATGAAAGTGGCGGCGGCGAGAGGAGGAGGAGATACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCAGCCAGAGCTTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCCAAACTTAATTTCCCCGAAAATGTTGTACAGGTTCAACCTCCTCCTCCGCTTCCAAATTTACCGGCAAGTGCGGTTGCTGGTTCCGGTTCCGGTTCGGTTGTGACAGGTTTTGCGCCGACGGTGATGCAGGGGACGCGGTTTCAGGACTCCTCTGATTTTCTGAGAGACTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGAGTTCCATGGACTCGACCACTGGTTCTTTGATTCGCAAATGGCAGCGTTTCAATCTTCTTTGCCGTCTTCGTTGTTGCCATCACCGCCGCCGCCGGCGTTTCTGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCTAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCACGGCGGAGAAGACGGTGGTAGCGGGTCGGGGTTCACAGAGCTTCTACCTTCGACTTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGA 822 0.5547 MMSRFMNAPSSPGLSPLFGVGHKRAREDDTGAGASVGLGVVAAASSQTQGNESGGGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVVQVQPPPPLPNLPASAVAGSGSGSVVTGFAPTVMQGTRFQDSSDFLRDYWGYSQLLRSTGEFHGLDHWFFDSQMAAFQSSLPSSLLPSPPPPAFLPSSASYPLFSSSQQMGIFRPPGEQGHGGEDGGSGSGFTELLPSTWSDTSGYPPPPPG* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1998 273 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Gso10g1998 273 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Gso10g1998 273 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 41 235 - -
Gso10g1998 273 MobiDBLite consensus disorder prediction 229 273 - -
Gso10g1998 273 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Gso10g1998 273 CDD AP2 69 119 IPR001471 GO:0003700|GO:0006355
Gso10g1998 273 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Gso10g1998 273 MobiDBLite consensus disorder prediction 1 21 - -
Gso10g1998 273 PANTHER DNA-BINDING DOMAIN 41 235 IPR044808 GO:0003700|GO:0009873
Gso10g1998 273 Pfam AP2 domain 61 110 IPR001471 GO:0003700|GO:0006355
Gso10g1998 273 Gene3D AP2/ERF domain 60 120 IPR036955 GO:0003700|GO:0006355
Gso10g1998 273 MobiDBLite consensus disorder prediction 43 65 - -
Gso10g1998 273 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1998 Gso-Chr10 46960478 46962268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1998 51 121 AP2-EREBP Transcription Factor Family AT5G61890 77.465 1.16e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g1998 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1998 - - gmx:100777915 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1998 10 46960478 46962268 Gso10g1998 10 46960478 46962268 ECH
Gso20g1356 20 43696062 43698335 Gso10g1998 10 46960478 46962268 GST
Gso16g1320 16 32598981 32601745 Gso10g1998 10 46960478 46962268 PCT
Gso2g0660 2 6812491 6814731 Gso10g1998 10 46960478 46962268 PCT
Gso10g1998 10 46960478 46962268 Gso16g1320 16 32598981 32601745 PCT
Gso10g1998 10 46960478 46962268 Gso2g0660 2 6812491 6814731 PCT