Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1994 ATGGATCCTCATACTGAAGAGTTGCCTCAGTACATACATATAAATCAGAATGAGTTTTGCATACGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACCCTGACAATGCATGTGGGGATAGCTGCCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGTCATTGTGATATATTATGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATATTAAGGCAGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAAATCAAGGTCTTAAAGATGCATTTATCATTTTCCTTAATGTGTCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAACTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAGTTAGCTTATGATTATAATTTTGAATGGTTTGGTGGTGCCAAGGTTCGTTGCCTCTGTGGTGCACTAAAATGTTCTGGATTCCTTGGAGCAAAATCTCGAGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGGCAGGTACTCAGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCGGTGTCAAATTTTAATGGACGAACCGAACCCTCTTTGGATGTTATAGTTAAAGCTGAGCAATTATCGGAGTCCACTGCTTTCCATGTTCAGCCCCTTGATTCAGTTCAGATGAAAGATTTAGATGTTAAGAAGATTAAAACTGATGTAGCAGACGAGGATATGAACTTTTATTCACAGGATAGTGAACATACCCTTTCTCAAAAGAATGCAATATCACATATCCGAAGTAATACTGCAGGCAGAAACTATTGCCTTGGACCTAGGTCCATGTCTACCAAAAGATCAAGGGCATATAATGGTGGAAGGTTCAAAAATCTCATAGAGAAGAAGATCGATGTTAAGTTTGCTGCTGCCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTTTTAATTGTGAGAAAATGAAGGATGATGCTACATCTGCTCTTGATTCCTTATATGATGAAATACGGCCTGCCATTGAAGAACACGAGAGGGATAGCCAAGACAGTGTATCCACGACTGTAGCAGAGAAGTGGATACAGGCTTGCTGCCTGAAATTAAAGGCGGAGTTTGACCTTTACTCATCCATTGTCAAAAATGTTGCTTGCACTGCGCAAAGGGCATCTGGCCAAGTAAAACCTACTGAAGTTGATAACGAAAACGAAATTAAGCTCCTGACAGGTTGA 1443 0.3978 MDPHTEELPQYIHINQNEFCIRRHKKQKEEDIAICECKYDADDPDNACGDSCLNVLTSTECTPGYCHCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSQAYENQGLKDAFIIFLNVSESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDGRYSVEKIPVYDSAEDEPVSNFNGRTEPSLDVIVKAEQLSESTAFHVQPLDSVQMKDLDVKKIKTDVADEDMNFYSQDSEHTLSQKNAISHIRSNTAGRNYCLGPRSMSTKRSRAYNGGRFKNLIEKKIDVKFAAALLASKEAQEEIFNCEKMKDDATSALDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRASGQVKPTEVDNENEIKLLTG* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1994 480 Gene3D SET domain 1 234 IPR046341 -
Gso10g1994 480 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0018024
Gso10g1994 480 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Gso10g1994 480 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0018024
Gso10g1994 480 SMART set_7 83 206 IPR001214 GO:0005515
Gso10g1994 480 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0018024
Gso10g1994 480 Pfam SET domain 94 200 IPR001214 GO:0005515
Gso10g1994 480 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Gso10g1994 480 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 4 419 - -
Gso10g1994 480 PANTHER SET DOMAIN PROTEINS 4 419 - -
Gso10g1994 480 SUPERFAMILY SET domain 9 220 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1994 Gso-Chr10 46926008 46931863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1994 65 222 C2H2 Transcription Factor Family AT2G23740 34.831 6.74e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso10g1994 SET 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1994 - - gmx:100804657 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1994 10 46926008 46931863 Gso10g1994 10 46926008 46931863 ECH
Gso20g1359 20 43728978 43737040 Gso10g1994 10 46926008 46931863 GST