Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1993 ATGGAACACGCCTTACAAGCCGTCGTCGCCTCTATCGCCAGCTTCTTCGTGGTCACCCTCCTTCTCGCCGCCGCCATCCTCCTCTGCCAGCACCACCGCAACTCCACCAAGACCCGGGCCCGCTCCTCCCATATCCGAACCCGCCCCGCCCCCCACCGCGAAGCCTCCTCCTCCCTCTCCGCCGTGGACGCCAGCTGGTCCTCCGACCCCAACCTCATCAAGATCTCCTGGGACGAGCTCGCCCGCGCCACCGACAACTTCTCCCCTCACCTCATCGTCGGCGACGGCAGCTTCGGCCTCGTCTACAAGGCCCGCCTCTCCAGCGGCGCCACCGTCGCAGTAAAAAAACTCTCCCCTGACGCCTTCCAAGGCTTCCGCGAGTTCACCGCCGAGATGGAAACCCTAAGCCGCCTCCGCCACCCAAACATCGTCAAAATCCTCAGTTACTGGGCCTCAGGCCCTGAACGCCTCCTCGTCTACGAGTTCATCGAAAAGGGAAACCTCGACCAGTGGCTCCACGAGCCCGATCTCTCTCTCTCCCTCTCCCCACTTCCCTGGCCCACACGTGTCAACATCATCCGTGGCGTGGCCCATGGGCTTTCCTACCTCCACGGCCTTGACAAGCCCGTCATTCACCGCGACATAAAAGCCAGCAACATCTTGTTGGACTCTAAGTTCCAGGCCCATATTGCTGACTTTGGGCTGGCCCGTAGAATCGATAAAACGCACTCCCACGTGTCAACGCAGTTCGCGGGAACTATTGGCTACATGCCTCCCGAGTGCATAGAAGGGTCCAATGTGGCTAACAGGGAGGTGGATGTGTATAGTTTTGGGATTTTGATGATTGAGACCGCGTCGAGTCACAGGCCCAATTTGCCGATGAAATTGGGCCCGGACGACATTGGTATGGTCCAGTGGGCCAGGAAGATGAAGGAGAAGAATGCGGAGATAGAGATGGTGGATGTGAATATTTCAAGAGGAGAAGGGTTGAGGGAGGAGACTGTTAAGGAGTACGTGCGCATCGCGTGTGAGTGCACACGTGAGATGCAGAAGGAAAGGCCCCAAATGCCACAAGTTGTACAATGGTTGGACTCCATGCCACTTTGA 1107 0.5818 MEHALQAVVASIASFFVVTLLLAAAILLCQHHRNSTKTRARSSHIRTRPAPHREASSSLSAVDASWSSDPNLIKISWDELARATDNFSPHLIVGDGSFGLVYKARLSSGATVAVKKLSPDAFQGFREFTAEMETLSRLRHPNIVKILSYWASGPERLLVYEFIEKGNLDQWLHEPDLSLSLSPLPWPTRVNIIRGVAHGLSYLHGLDKPVIHRDIKASNILLDSKFQAHIADFGLARRIDKTHSHVSTQFAGTIGYMPPECIEGSNVANREVDVYSFGILMIETASSHRPNLPMKLGPDDIGMVQWARKMKEKNAEIEMVDVNISRGEGLREETVKEYVRIACECTREMQKERPQMPQVVQWLDSMPL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1993 368 Pfam Protein kinase domain 92 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1993 368 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Gso10g1993 368 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 365 - -
Gso10g1993 368 SMART serkin_6 87 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1993 368 MobiDBLite consensus disorder prediction 38 58 - -
Gso10g1993 368 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1993 368 PANTHER OS01G0253100 PROTEIN 1 365 IPR045271 GO:0004714|GO:0006468
Gso10g1993 368 Gene3D Phosphorylase Kinase; domain 1 50 162 - -
Gso10g1993 368 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Gso10g1993 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Gso10g1993 368 CDD STKc_IRAK 93 366 - -
Gso10g1993 368 SUPERFAMILY Protein kinase-like (PK-like) 69 366 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1993 Gso-Chr10 46923382 46924924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1993 72 363 Receptor kinase-like Gene Family AT5G07280 42.905 1.44e-65 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso10g1993 Pkinase 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1993 - - gmx:100802728 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1993 10 46923382 46924924 Gso10g1993 10 46923382 46924924 ECH
Gso20g1360 20 43737741 43740041 Gso10g1993 10 46923382 46924924 GST