Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1989 ATGGGCTGTGTTCAGGCCAAGTCATTGGATTTGGAAGAAAGTCCCGAATACAGGACCCTAGACAGATTGAAGTTGGATAATGGCTATGTCCCAAGTACCGACTTTGTTGCTCATAGAAGATCCACCGGTCAAAGACATCATGAACCTAATAAGGAGTATGAAAGACTGCATCAGCATCAGAGAAGAGAACAACCCAGAAAGCAAACTAATAAACTTATTGAGTCTGGTGTTGCCAATGGTGAAGGGCTTCATCTTAATAAGGGCAAGGTGGTTGGTAGAGAGGGGAGGAGAGTCACACGTCGTGATGATAAGAAGTTGGAAAACAAGTGTTGCTTTGAGGATGAGATGGTTGATGGCTGGCCAAAGTGGTTGGTTGATAATGTTCCTACACAAGTGTTGGCTGGCTTGGTTCCCAGGAGTGCTGAATCCTACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTGGATCGAGAAACAGGAGAAATTGTGGCCCTGAAGAAGGTTAAATTCAATACATCAGAGCCTGAAAGCATTAAGTTTATGGCAAGAGAAATTATGATACTACAGAGACTGGATCACCCCAATGTATTAAAACTCAAAGGATTAGCCACTTCAAGAATGCAGTACAGTATATACCTTGTTTTTGAGTTCATGCAAACAGATTTGGCAAGAGTTATTGCTCGTCCTGAAGAGAGACTAACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTCCAGCACTGCCATGAAAGGGGAATTCTGCATCGAGACATAAAGGGGTCAAACCTTTTAATTGATAAAAATGGGATGCTTAAGATTGCAGATTTTGGTCTTGCCAATTTTTATGGTCCAGATCGTCACCGGCCTCTCACAAGCCGGGTTGTGACACTATGGTACAGAGCTCCTGAGTTATTGTTAGGTGACACAGATTATGGAGTTGGTGTTGATCTATGGAGTGCTGGATGTCTCCTGGCAGAAATGTTTACAGGAATTCCAATCATGCCTGGCAGAAATGAGGTTGAGCAGCTTCATAAAATTTTCCGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTGAAACTTTCTACAACTTTTAGACCTCCAAAATCTTATAGACCTAGCCTTGTAGAAACCTTCAAGGATCTCCCTCCATCTTCTTTAGGTCTTTTATGCACTTTGCTTGCTTTGGATCCTGCATTCCGTGGCAGTGCATCTAAAGCTCTTAAAAATCAGTTTTTCATTACTAGCCCATTGGCATGTGACCTCTCTGGTCTGCCTGTTATCGTCAGAGAGGATGATGAGCTTGTTCAAGCCAATGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATATCTGGAGCGTCGTAAGAATTCAACATCTAAGAGACCAATAGAACATACTGTATCTTCCAAACAGGAATTGATAAGGAATGCGAAACCTGAAACTTTTGTTCCAATTGAAGACACGGATAGCACTAGTACCTCATCTAGTGTAAACCCAGGAGGGGCTAAGGACCAATCACCTTTTTTTCTATCTCCATTTGGAGCTTTAGATCAAAAGCTATCTCCAAAAACCCATCACCATGTTAATGGTGGTGAAAAAAACATCAAGAACCTTCCTCCATTACCCAAGTCAAAACCAAATGCTACCAAGAAAGATGATATCAAATACAGACCAGACCACTTTTTCAGGTCAGCTTCCACCAGAGAATTTAGATACTTAAAAAGGGAGGAACGTTTACTCTTGGAAATTGATGATTAG 1812 0.4167 MGCVQAKSLDLEESPEYRTLDRLKLDNGYVPSTDFVAHRRSTGQRHHEPNKEYERLHQHQRREQPRKQTNKLIESGVANGEGLHLNKGKVVGREGRRVTRRDDKKLENKCCFEDEMVDGWPKWLVDNVPTQVLAGLVPRSAESYKMIDKVGQGTYSNVYKALDRETGEIVALKKVKFNTSEPESIKFMAREIMILQRLDHPNVLKLKGLATSRMQYSIYLVFEFMQTDLARVIARPEERLTEPQVKCYMHQLLSGLQHCHERGILHRDIKGSNLLIDKNGMLKIADFGLANFYGPDRHRPLTSRVVTLWYRAPELLLGDTDYGVGVDLWSAGCLLAEMFTGIPIMPGRNEVEQLHKIFRLCGTPSEEYWRKLKLSTTFRPPKSYRPSLVETFKDLPPSSLGLLCTLLALDPAFRGSASKALKNQFFITSPLACDLSGLPVIVREDDELVQANEQIKYMNSKIRRSRTYLERRKNSTSKRPIEHTVSSKQELIRNAKPETFVPIEDTDSTSTSSSVNPGGAKDQSPFFLSPFGALDQKLSPKTHHHVNGGEKNIKNLPPLPKSKPNATKKDDIKYRPDHFFRSASTREFRYLKREERLLLEIDD* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1989 603 PANTHER CELL DIVISION PROTEIN KINASE 1 568 - -
Gso10g1989 603 Gene3D Phosphorylase Kinase; domain 1 134 226 - -
Gso10g1989 603 Gene3D Transferase(Phosphotransferase) domain 1 227 463 - -
Gso10g1989 603 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Gso10g1989 603 MobiDBLite consensus disorder prediction 503 520 - -
Gso10g1989 603 Pfam Protein kinase domain 144 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1989 603 ProSiteProfiles Protein kinase domain profile. 144 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1989 603 SUPERFAMILY Protein kinase-like (PK-like) 139 430 IPR011009 -
Gso10g1989 603 MobiDBLite consensus disorder prediction 467 522 - -
Gso10g1989 603 MobiDBLite consensus disorder prediction 39 69 - -
Gso10g1989 603 MobiDBLite consensus disorder prediction 39 99 - -
Gso10g1989 603 PANTHER CYCLIN-DEPENDENT KINASE 1 568 - -
Gso10g1989 603 MobiDBLite consensus disorder prediction 467 486 - -
Gso10g1989 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Gso10g1989 603 SMART serkin_6 144 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1989 603 MobiDBLite consensus disorder prediction 540 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1989 Gso-Chr10 46895616 46900736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1989 139 440 Core Cell Cycle Gene Families AT5G10270 47.500 4.65e-92 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso10g1989 Pkinase 7.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1989 K08819 - gmx:100776854 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1989 10 46895616 46900736 Gso10g1989 10 46895616 46900736 ECH
Gso20g1363 20 43765219 43773218 Gso10g1989 10 46895616 46900736 GST