LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso10g1985	ATGTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAAAGGGCTGGTGAGTTGACTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAGACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTTGAGAGACTCAAGAAAATCAGAAACCACCGTGGTTTGAGGCATTACTGGGGCCTTCGTGTCCGTGGTCAGCACACCAAGACTACTGGCCGTAGGGGAAAGACTGTTGGTGTCTCTAAGAAGCGTTAA	459	0.4793	MSLVANEDFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFANIACKKADVDMNKRAGELTAAELDSVMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*	153

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso10g1985	152	Gene3D	30s ribosomal protein s13, domain 2	92	142	IPR027437	-
	Gso10g1985	152	ProSitePatterns	Ribosomal protein S13 signature.	121	134	IPR018269	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Gso10g1985	152	Pfam	Ribosomal protein S13/S18	14	142	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Gso10g1985	152	Gene3D	-	1	80	-	-
	Gso10g1985	152	PANTHER	40S RIBOSOMAL PROTEIN S18-RELATED	1	152	-	-
	Gso10g1985	152	SUPERFAMILY	S13-like H2TH domain	13	152	IPR010979	GO:0003676
	Gso10g1985	152	PIRSF	RPS13p_RPS13a_RPS18e_RPS13o	4	152	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Gso10g1985	152	PANTHER	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	1	152	-	-
	Gso10g1985	152	Hamap	30S ribosomal protein S13 [rpsM].	12	152	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Gso10g1985	152	ProSiteProfiles	Ribosomal protein S13 family profile.	15	145	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso10g1985	Gso-Chr10	46864728	46866610	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso10g1985	1	152	Cytoplasmic Ribosomal Protein Gene Family	AT4G09800	93.421	3.99e-107	300

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso10g1985	K02964		-	gmx:100306646	301.597

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso10g1985	10	46864728	46866610	Gso10g1985	10	46864728	46866610	ECH
	Gso20g1366	20	43802498	43804428	Gso10g1985	10	46864728	46866610	GST