Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1980 ATGCCGGAATCGGAGATAGGGACGCCGACGGCGGCGTCGGTGCCGGCGACGCCGGATACTCCGGGAGGACCGTTATTCACGTCGCTGCGAGTTGACTCACTGTCACATGAACGTGAGTCGTTCTCAATGGCTGGGTGCAAGTGTCTGCCGACCAAGGGCCATAGCTGCTTCACTGATTTCTCAGTTGGTGTTCCACTTCCCAATGTTTCTCTCACTCAAAAGATGAACAAACAGGTTGGAGCAGAGTTTGTGGGGACTTTCATATTGATATTTGCAGCAACGGCAGGACCAATAGTGAACAACAAGTACAATGGAGTAGAGAGTCTAATGGGAAATGCAGCTTGTGCAGGGTTAACTGTGATGTTTATCATTCTGTCCATTGGCCACATCTCAGGTGCACACCTGAATCCATCCCTCACCATTGCCTTCGCGGCCTTTCGCCACTTCCCTTGGACCCATGTCCCGGCCTACATAGCAGCACAAGTCTCTGCCTCCATATGTGCATGTTATGCTCTCAAAGGTGTTTACCACCCTTTCCTCTCCGGTGGGGTCACTGTCCCCACCGTCAGCGTCGCCCAGGCTTTTGCAACCGAGTTTATCATCACTTTTATTCTCTTGTTTGTTGTCACTGCTGTCGCCACCGATACTCGTGCGGTTGGTGAATTGGCAGGTATTGCTGTTGGGGCTACAGTTTTACTCAACATTCTCATATCAGGGCCGACAAGTGGTGGTTCGATGAATCCGGTGCGCACGTTGGGTCCAGCCGTGGCAGCAGGAAATTACAAGCATATATGGATCTATTTGGTGGCACCAACGTTGGGTGCTCTCGCTGGTGCTGGTGTTTATACGCTCGTCAAGCTGCGTGACGAGGAGGCCGAACCGCCGCGACAAGTTAGAAGTTTCCGTCGCTAA 912 0.523 MPESEIGTPTAASVPATPDTPGGPLFTSLRVDSLSHERESFSMAGCKCLPTKGHSCFTDFSVGVPLPNVSLTQKMNKQVGAEFVGTFILIFAATAGPIVNNKYNGVESLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWTHVPAYIAAQVSASICACYALKGVYHPFLSGGVTVPTVSVAQAFATEFIITFILLFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGAGVYTLVKLRDEEAEPPRQVRSFRR* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1980 303 Pfam Major intrinsic protein 73 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso10g1980 303 CDD MIP 77 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso10g1980 303 SUPERFAMILY Aquaporin-like 74 295 IPR023271 -
Gso10g1980 303 ProSitePatterns MIP family signature. 134 142 IPR022357 -
Gso10g1980 303 Gene3D Glycerol uptake facilitator protein. 68 298 IPR023271 -
Gso10g1980 303 PANTHER AQUAPORIN NIP2-1 10 301 IPR034294 -
Gso10g1980 303 PRINTS Major intrinsic protein family signature 77 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso10g1980 303 PRINTS Major intrinsic protein family signature 116 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso10g1980 303 PRINTS Major intrinsic protein family signature 153 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso10g1980 303 PRINTS Major intrinsic protein family signature 197 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso10g1980 303 PRINTS Major intrinsic protein family signature 228 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso10g1980 303 PRINTS Major intrinsic protein family signature 265 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso10g1980 303 MobiDBLite consensus disorder prediction 1 23 - -
Gso10g1980 303 PANTHER AQUAPORIN NIP5-1-RELATED 10 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1980 Gso-Chr10 46792134 46798460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1980 25 303 Major Intrinsic Protein MIP AT4G10380 73.333 4.84e-147 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1980 K09874 - gmx:100775229 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1371 20 43873066 43880037 Gso10g1980 10 46792134 46798460 GST