Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1965 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGCCCAGTAGTCTCATTCAGACTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACGGCTTTAAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGCGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAACCGAGAACAGGGTCGTGGCGGTCCTGGAATGACTACAAATGTTGACCATCAGAAACAAGTTGGCATCCCAGCTGTCCTTGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCATTAGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGTTGACTGAGATTATCTCTGAGCTGAAGGGAATGGCTACACAGAACAAGGAACTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTGTTACAAATGCCGAACCTTAGGCTGGTTTCAGATCAAACCTCACAGTCTTTAATGAATGAAGGCCAGCTGGGTCAGCCATCATTGGTTCAAACTCTGTCAGGCCTTCCTCCTCCTGGGCAGGGCAAGTTGCAGCCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAACACCATACCTCATAATCCTTTGGCTCCTAATCAATTAACTGCACATCCAAAGCCTCCAGTGCAGCCTCGGATTCCCCTTCAGCAACATCCAAACAATCTTGTACTGCCAGGAACATTGTCAGGGCAGTCTAATTTAATGCTTCCTTCTGCACGTCCTCCAGGTTTGGGCAGTTTGTCTGTTAGGCCTCTAATTCAACCGGGAACTTCAACTGCTCTGAACCAGCAAATGCATCCCTCTTTGCTACAGCATTCTGTACATGTTGGAAACTCAACTGTAGGACATAATATTCAAATGCATTGCCCCTCCATGTCATCAGCAAATTCTCAGTTACTGAGTAAAGGTGATAAATCTTCTAAAGTTATTGAGGATTTAAATTGGGCCAAGAGAGCTAATACACATTCAAAATCAAACATTCCTTTGGGAGTAGAGAAAACAAACATGGTTCATGATTCTTCAGAATCTTTTACTCGGCCGTCAAAGGTCATGAAATTGGATGAGGGAAGGAGTGCCCCTCTTTCTTCAGGAATTTCAGACATGCCTTTCACCGATGGATCATCTCATATCCTGGGAAGAAGTTCATTACCTGTACATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATTTTCTCAGCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAACAATTGAGTTCCTTGCCACCAGATCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTACGGCGAGATCAGATACAGCCCTCATAA 1638 0.4554 MATSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTTNVDHQKQVGIPAVLGEAVQHQPIGLHIAITAAAVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSLMNEGQLGQPSLVQTLSGLPPPGQGKLQPGLTPYAQEGQVNTIPHNPLAPNQLTAHPKPPVQPRIPLQQHPNNLVLPGTLSGQSNLMLPSARPPGLGSLSVRPLIQPGTSTALNQQMHPSLLQHSVHVGNSTVGHNIQMHCPSMSSANSQLLSKGDKSSKVIEDLNWAKRANTHSKSNIPLGVEKTNMVHDSSESFTRPSKVMKLDEGRSAPLSSGISDMPFTDGSSHILGRSSLPVHAAPKAEGQYSEQQFSQLPPDVESVLLQQVLNLTPEQLSSLPPDQQQQVIQLQQALRRDQIQPS* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1965 545 MobiDBLite consensus disorder prediction 85 109 - -
Gso10g1965 545 Gene3D - 151 232 - -
Gso10g1965 545 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Gso10g1965 545 MobiDBLite consensus disorder prediction 255 304 - -
Gso10g1965 545 Gene3D - 1 115 IPR012677 -
Gso10g1965 545 Pfam Transcription termination and cleavage factor C-terminal 507 539 IPR026896 GO:0031124
Gso10g1965 545 SMART rrm1_1 10 83 IPR000504 GO:0003723
Gso10g1965 545 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 540 - -
Gso10g1965 545 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 230 IPR025742 -
Gso10g1965 545 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Gso10g1965 545 Gene3D - 502 542 IPR038192 -
Gso10g1965 545 CDD RRM_CSTF2_CSTF2T 11 85 - -
Gso10g1965 545 MobiDBLite consensus disorder prediction 278 293 - -
Gso10g1965 545 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1965 Gso-Chr10 46655226 46668133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1965 11 165 Eukaryotic Initiation Factors Gene Family AT1G22760 26.923 3.27e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1965 K14407 - gmx:100794399 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1390 20 44056941 44064423 Gso10g1965 10 46655226 46668133 GST