Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1961 ATGTCTCAAACAACAGCTCAAGTTTCCAAGACCAAGCCAATGGAAAACCTTTCACCATTGATTTACAAAAACCCCATTAGAAGAACTTCTAGGCGATCTACAATGTATCTTGGTGTGAGAAAAAGGCCATGGGGAAGATATGCTGCTGAGATTAGGAACCCATACACCAAAGAGAGACACTGGCTAGGCACATTTGACACTGCTGAAGAGGCTGCTATAGCTTATGATCTTTCATCTATCAAGATTTGTGGCATTAATGCTCGAACTAATTTTCACTACCCTTTTGTGTCTCTTCCACCACTTCCTATGTCGTCATTGCCTCCTCCACCGCCACCGCCGACCCCAGAGTTGGATCCAAGTGTTGAAGTTTGTCTAGAGATGATGAATGCTGCTTCTTACGATGGTGATGATGAATCTCTTGTTATTGCTTCCATTTTGCAAAGTTTTTCTAATTCTGGTAACTGTTCTTTTTAG 474 0.4198 MSQTTAQVSKTKPMENLSPLIYKNPIRRTSRRSTMYLGVRKRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAIAYDLSSIKICGINARTNFHYPFVSLPPLPMSSLPPPPPPPTPELDPSVEVCLEMMNAASYDGDDESLVIASILQSFSNSGNCSF* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1961 157 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Gso10g1961 157 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 148 - -
Gso10g1961 157 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Gso10g1961 157 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Gso10g1961 157 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Gso10g1961 157 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF088 14 148 - -
Gso10g1961 157 CDD AP2 36 91 IPR001471 GO:0003700|GO:0006355
Gso10g1961 157 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Gso10g1961 157 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Gso10g1961 157 Pfam AP2 domain 37 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1961 Gso-Chr10 46625971 46626730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1961 36 108 AP2-EREBP Transcription Factor Family AT1G12890 68.919 4.22e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso10g1961 AP2 3.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1961 - - gmx:100816937 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1395 20 44105950 44106535 Gso10g1961 10 46625971 46626730 GST