Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1955 ATGGCCGGCAACCCCGCCACCACTTCCTCCTCCGCATTATCTCCCGAGAAATTTAATTTCAATTTCTCCCCCGATAACCCCTCCCGAATCACCCTCACTTCGGATCAGGTCAACCACTGCACCCAAGCCCTCAACATTCTGAAGGAGAAGCTCCACGCTCCTAACGTGATCACTCAGGAGTTTGCACACTTGCAGGCGAACAGGATAACGCCGAGCGAGATGAGGAGAAGATGCACCGTCGCGTATGACGACGTCAATTTGAGGAAAAACCGATACACCGACGTTCTGCCATTTGACAAGAACAGGGTTGTTCTCAAATCTAGTACTGATTATAGACCTGAAGCACAGGGGTATATCAATGCAAGCCTTGTCTCGACCTCCTCAGCTGGAAACGTGTCCCAGTTTATAGCCACGCAAGGTCCACTTCAACATACTTACGAGGATTTCTGGGAAATGATCATCCAATATCACTGCCCTGCAATTATCATGCTTACTAGATTGGTGGATAATTACAAGATGGCAAAATGTGGAGATTATTTTCAAGCTGAGGATAGGCCTAGAGAAGTTGGTAATATTTCTATTATTGGTAAATGGGAGAACACGACTGAAACTTCACTCGTGCTGCGCCATTTGGAGGTGAACCATAGAGAGGTAGAAGATGCGCCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAAAGATACATTTGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTACCACCAAACTTTGGTCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATAGTTGCTGGTGATATGTCTGCTGTAGATATTGCTAAGACAATAGCTATGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACCCAGGATCAGTACATTTTCTGCTATAACGCTATCATAGATGAACTGGAAGACCTTGTATCTCAGCAGCAGTCGGAGTAG 1017 0.4523 MAGNPATTSSSALSPEKFNFNFSPDNPSRITLTSDQVNHCTQALNILKEKLHAPNVITQEFAHLQANRITPSEMRRRCTVAYDDVNLRKNRYTDVLPFDKNRVVLKSSTDYRPEAQGYINASLVSTSSAGNVSQFIATQGPLQHTYEDFWEMIIQYHCPAIIMLTRLVDNYKMAKCGDYFQAEDRPREVGNISIIGKWENTTETSLVLRHLEVNHREVEDAPLSVLHIQYPEWPDHGVPKDTFAVREILKRLYHLPPNFGPIVVHCSAGIGRTGTYCTIHNTIQRIVAGDMSAVDIAKTIAMFRSQRIGMVQTQDQYIFCYNAIIDELEDLVSQQQSE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1955 338 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 246 318 IPR000387 GO:0016311|GO:0016791
Gso10g1955 338 CDD PTPc_plant_PTP1 118 322 - -
Gso10g1955 338 ProSitePatterns Tyrosine specific protein phosphatases active site. 264 274 IPR016130 GO:0016311|GO:0016791
Gso10g1955 338 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 43 329 IPR029021 -
Gso10g1955 338 Gene3D Protein tyrosine phosphatase superfamily 29 329 IPR029021 -
Gso10g1955 338 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 18 337 - -
Gso10g1955 338 ProSiteProfiles PTP type protein phosphatase domain profile. 57 327 IPR000242 GO:0004725|GO:0006470
Gso10g1955 338 PRINTS Protein tyrosine phosphatase signature 117 124 IPR000242 GO:0004725|GO:0006470
Gso10g1955 338 PRINTS Protein tyrosine phosphatase signature 135 155 IPR000242 GO:0004725|GO:0006470
Gso10g1955 338 PRINTS Protein tyrosine phosphatase signature 223 240 IPR000242 GO:0004725|GO:0006470
Gso10g1955 338 PRINTS Protein tyrosine phosphatase signature 261 279 IPR000242 GO:0004725|GO:0006470
Gso10g1955 338 PRINTS Protein tyrosine phosphatase signature 294 309 IPR000242 GO:0004725|GO:0006470
Gso10g1955 338 PRINTS Protein tyrosine phosphatase signature 310 320 IPR000242 GO:0004725|GO:0006470
Gso10g1955 338 Pfam Protein-tyrosine phosphatase 86 325 IPR000242 GO:0004725|GO:0006470
Gso10g1955 338 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 18 337 - -
Gso10g1955 338 SMART ptp_7 224 326 IPR003595 -
Gso10g1955 338 SMART PTPc_3 56 329 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1955 Gso-Chr10 46551134 46555740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1955 35 333 Protein tyrosine phosphatase (PTP) family AT1G71860 69.231 2.91e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1955 - - gmx:548044 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1403 20 44194708 44198675 Gso10g1955 10 46551134 46555740 GST