Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1949 ATGGGTACTTCCAATCTTCTATTGTTCTTCTCTCTGGTGAGTCTGTGTGCTATGGCGGCTTCCAAGGTGGTTCTTATTGGGAATAATATCACTCTCTCCTTCGATGATATTGAAGCTAATTTTGCCCCAACAGTCAAAGGTTCTGGAGAATATGGGATCTTATATTTGGCAGAACCACTGGATGCATGTACAGAATTGACAAATAAAGTTGAACAACTTCCCAATGCGAGTTCACCTTTTGCTTTGGTGGTTAGAGGGGGATGTAGCTTTGAGGAAAAAGTCAGAAGGGCACAAAAGGCTGGCTTCAAAGCTGTAATTGTCTATGACAATGAAGATGGTGGCATCTTGGTTGCGATGGCAGGAAATTCTGCTGGTATAAAAATACACGCTGTATTTGTATCTAAAGCTTCAGGTGAAATACTAAGCAAATATGCTGGGTTGACTAATGTGGAAATATGGCTCATTCCAACTTTTGAAAACTCAGCGTGGTCTATCATGGCAATTTCATTTATTTCCCTGCTAGCTATGTCTGCGGTGCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGAGCTCCTCTTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGATAACTGTACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGTGTTGGTGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCGTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCTAGATCCGGCTTAACTGATCCACCACCTTCAGAATCCACACCCTTGCTCTCATCAACCCCAGCATCTATGGCATCGTCTGTCTTATCTTCTGCAAGATCATCGCTAGCTTCATCTTCAGCCATACAAATTGCCCGGACAGCATCTATGGCATCCTCTGCCTTACCTTCTGCGAGATCATCCCTAGCTTCCTCTTCGGCAATACAAATTGCCTGGGCAGCTTCACAGACCCCATCTGTTTCTCGTAACCACTCCATAGCCAGTACACCTTATGTTCAGCCATCTCTTAGGTCCTCCTACCATCAATCCCCCTCCCTAAGTATCAGCCGAAGCTCCGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCACGTTCCATGGGATACCCGTCTTTGTCATCTCTTAACTCGCGGTACATGTCTCCACACATTCCAAGTCCAAGCAATGCTTCGGTGAGCTATATGGGCTCATCCAGTCATCAACAACATCCTCTCCGCTATAGTGAGTCAGCTGCAAGCTTCTCCCCATTTGCATCGACACACTCCCTTCCGGAATGTTAA 1410 0.4532 MGTSNLLLFFSLVSLCAMAASKVVLIGNNITLSFDDIEANFAPTVKGSGEYGILYLAEPLDACTELTNKVEQLPNASSPFALVVRGGCSFEEKVRRAQKAGFKAVIVYDNEDGGILVAMAGNSAGIKIHAVFVSKASGEILSKYAGLTNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRAPLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARSGLTDPPPSESTPLLSSTPASMASSVLSSARSSLASSSAIQIARTASMASSALPSARSSLASSSAIQIAWAASQTPSVSRNHSIASTPYVQPSLRSSYHQSPSLSISRSSVDLRNASQRSLASHLNSPRSMGYPSLSSLNSRYMSPHIPSPSNASVSYMGSSSHQQHPLRYSESAASFSPFASTHSLPEC* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1949 469 SUPERFAMILY PA domain 79 144 IPR046450 -
Gso10g1949 469 Pfam Ring finger domain 232 275 IPR001841 -
Gso10g1949 469 SUPERFAMILY RING/U-box 223 282 - -
Gso10g1949 469 SMART ring_2 233 274 IPR001841 -
Gso10g1949 469 CDD PA_C_RZF_like 19 162 IPR044744 -
Gso10g1949 469 CDD mRING-H2-C3H2C2D_ZSWM2 232 275 - -
Gso10g1949 469 Pfam PA domain 80 141 IPR003137 -
Gso10g1949 469 ProSiteProfiles Zinc finger RING-type profile. 233 275 IPR001841 -
Gso10g1949 469 Gene3D - 21 155 - -
Gso10g1949 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 280 IPR013083 -
Gso10g1949 469 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 326 - -
Gso10g1949 469 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 325 403 - -
Gso10g1949 469 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 326 - -
Gso10g1949 469 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 325 403 - -
Gso10g1949 469 MobiDBLite consensus disorder prediction 431 469 - -
Gso10g1949 469 MobiDBLite consensus disorder prediction 370 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1949 Gso-Chr10 46459708 46465387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1949 20 468 C3H Transcription Factor Family AT1G22670 46.154 2.70e-117 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1949 K15692 - gmx:100791248 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1409 20 44260880 44266848 Gso10g1949 10 46459708 46465387 GST