Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1947 ATGCCATCACCAACACCAATACCAACGGCAGTGTTTGGTGGTGTAGAAACTCCTAATGGAGACTCTTCTAACACCAAGCCTCATCCCAAACAAGAATCGCGTGACCTCTCTCCTTTTTTGTCTTGCTCTTACCCCATCACTCTTAAGTTCATTGACGTGGCATACCGATTGAAGATAGAGGACAAACAAAAAAACGGAGGCAGCATCAAGAGATTTTTTACTCCGCACGAATCATCACCGTCAGATCAAGGATCAAGGGCGGGAGCGTCGCAGGAGCGAACTATTTTAAAGGGAGTAACGGGGATAGCACATCCAGGGGAGATCTTAGCGGTGCTGGGCCCATCGGGGAGCGGAAAATCAACGCTCCTTAACGCGCTCGCAGGGAGACTCCACGGACACGGTCTCACCGGAACAATCCTCGCAAACTCGAGCAAACTCACCAAACCGGTTCTCCGGCGAACCGGTTTCGTCACACAGGACGATATTCTCTACCCTCACTTGACGGTTCGCGAGACGCTCGTGTTCTGCGCCATGCTACGGCTCCCGCGCACGCTGCCGCGCGCGGCGAAGATCGCAGTTGCGGAGGCGGCGATCGCGGAGCTAGGGCTGGGGAAGTGCGAGGACACCATAATCGGAAACAGCTTCATCCGCGGAGTCTCCGGCGGGGAGAGGAAGCGCGTGAGCATCGCGCACGAGATGCTGGTGGACCCTTCGCTCCTAATACTGGACGAGCCTACCTCCGGCTTGGACTCTACGGCGGCGCACCGCCTCGTGGTGACGCTGGGTTCGCTGGCGAAGAAGGGCAAAACGGTAATTACATCGGTGCACCAGCCATCGAGCCGCGTCTACCAGATGTTCGATAAAGTTCTGGTGCTATCGGAGGGACAGTGTTTGTACTTCGGCAAAGGAAGCGACGCCATGCGCTACTTTCAGTCGGTTGGGTTCGCGCCGTCTTTTCCGATGAATCCGGCAGATTTTCTGCTCGATCTCGCTAACGGTGTTTGCCATGTCGATGGTCAAAGCGAAAAAGATAGACCAAACATAAAGCAAAACCTAATCCATTCATACAACACAATATTGGGTCCCAAGGTAACAGCTGCCTGCATGGACAGTACTAATGTTCCTTCAAGAAACACACACCCTTTGAGAAGCAACTCTTCAAAAGAATTTAGACGTAACGACAGGGTTAGCTTCTTTGATTGGTTTTACCAATTCAGAATTCTTCTCCAGAGAAGCCTCAAGGAAAGAAAACACGAATCCTTCAACACTCTGAGAGTCTGTCAAGTTATTGCTGCAGCACTGTTAGCTGGTTTAATGTGGTGGCACTCAGACTACAGGAACATTCAAGATAGGCTTGGCCTACTCTTCTTCATTTCCATCTTCTGGGGAGTCTTCCCGTCTTTCAACTCGGTTTTCGCATTCCCTCAAGAACGTGCCATCTTCATGAAAGAGCGAGCTTCTGGTATGTACACACTGTCCTCCTATTTCATGGCTCGAATTGTTGGAGATCTGCCAATGGAGCTTATTCTTCCCACGATTTTCCTCATTGTGACATATTGGATGGGTGGATTAAAGCCTGATTTGTGGGCTTTTCTCTTGACTTTGTTGGTTGTGCTTGGATATGTGATGGTGTCACAAGGTCTTGGCCTTGCTTTAGGGGCAGCAATAATGGATGCCAAACAGGCTTCCACAGTGGCAGCAGTGACAATGCTAGCATTTGTGTTGACAGGTGGATACTATGTCCATAAGGTGCCATCTTGCATGGCTTGGATCAAATATATATCCACAACCTTCTACTGTTATAGGCTGCTGACTAGAATCCAGTATGAGGATGGCAAGAAGATATCATATCTATTGGGTTGCTATCAACGTGATAAGGGTGGTTGCAGCTTTGTTGAAGAGGATGTGGTGGGGCAAATTGGCACCCTAGGATGCATTGGGGTGTTGCTTTTCATGTTTGTGTTCTACAGATTATTGGCCTACCTTGCCTTGAGACGCATCAAGAGTTGA 2010 0.4985 MPSPTPIPTAVFGGVETPNGDSSNTKPHPKQESRDLSPFLSCSYPITLKFIDVAYRLKIEDKQKNGGSIKRFFTPHESSPSDQGSRAGASQERTILKGVTGIAHPGEILAVLGPSGSGKSTLLNALAGRLHGHGLTGTILANSSKLTKPVLRRTGFVTQDDILYPHLTVRETLVFCAMLRLPRTLPRAAKIAVAEAAIAELGLGKCEDTIIGNSFIRGVSGGERKRVSIAHEMLVDPSLLILDEPTSGLDSTAAHRLVVTLGSLAKKGKTVITSVHQPSSRVYQMFDKVLVLSEGQCLYFGKGSDAMRYFQSVGFAPSFPMNPADFLLDLANGVCHVDGQSEKDRPNIKQNLIHSYNTILGPKVTAACMDSTNVPSRNTHPLRSNSSKEFRRNDRVSFFDWFYQFRILLQRSLKERKHESFNTLRVCQVIAAALLAGLMWWHSDYRNIQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFMKERASGMYTLSSYFMARIVGDLPMELILPTIFLIVTYWMGGLKPDLWAFLLTLLVVLGYVMVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCMAWIKYISTTFYCYRLLTRIQYEDGKKISYLLGCYQRDKGGCSFVEEDVVGQIGTLGCIGVLLFMFVFYRLLAYLALRRIKS* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1947 669 SMART AAA_5 105 296 IPR003593 -
Gso10g1947 669 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 23 667 - -
Gso10g1947 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 312 IPR027417 -
Gso10g1947 669 CDD ABCG_EPDR 93 301 - -
Gso10g1947 669 MobiDBLite consensus disorder prediction 67 91 - -
Gso10g1947 669 MobiDBLite consensus disorder prediction 1 36 - -
Gso10g1947 669 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 57 319 IPR003439 GO:0005524
Gso10g1947 669 Pfam ABC-2 type transporter 276 367 IPR043926 GO:0140359
Gso10g1947 669 Pfam ABC-2 type transporter 403 608 IPR013525 GO:0016020|GO:0140359
Gso10g1947 669 MobiDBLite consensus disorder prediction 72 90 - -
Gso10g1947 669 Pfam ABC transporter 96 247 IPR003439 GO:0005524
Gso10g1947 669 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 23 667 - -
Gso10g1947 669 Gene3D - 86 313 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1947 Gso-Chr10 46439615 46446899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1947 106 355 Calmodulin-binding Proteins AT2G36910 27.559 4.03e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1947 K05681 - gmx:100812127 1298.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1947 10 46439615 46446899 Gso10g1947 10 46439615 46446899 ECH
Gso20g1411 20 44281872 44289667 Gso10g1947 10 46439615 46446899 GST