Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1943 ATGTCTTCAAAGTGCAAAAATGTGATGCCGCACGAGACTCCGAACGTGAAGGAGCACTACGTGATTGGGAACAAGGTACTAGGAAAAGGGCACGTGGCGACAACATACGTGTGCACTCACAAGGAGACAAAGAAGAGGTATGCATGCAAAACGATCCCAAAGGCGAAGCTGTTGAAGCAAGAGGACTACGACGAAGTGTGGAGGGAGATTCAGGTGATGCACCATTTGTCGGAGCACCCCAACGTGGCCAGGGTGCAGGGAAGCTACGAGGACAAATTCGCCGTGCACCTTGTCATGGAGATGTGCCGTGGCGGCGAGCTTTTCTATAGGATCACTCAGAAGGGTCATTACAGCGAGAAAGAGGCTGCCAAGTTGATGAAGACCATTGTTGGAGTGGTCGAGGCTTGTCACTCTCTTGGGGTCATCCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATAGCCATTCCGAAACTGCCACCATCAAGGTCATCGATTTCGGATTCTCTGTCTTCTACAAGCCAGGACAAACGTTTAGTGATATAGTAGGAACTTGCTACTACATGGCTCCTGAGGTTTTACGCAAGCAAACTGGACCAGAAGTGGACGTATGGAGTGCTGGTGTTATCCTATACATCTTACTGAGAGGGCACCCACCTTTCTGGGCAAAATCCGAATCAGCAATTTTCCAAGAGATTTTACATGGAGAGATTGATTTTGTTTCTGATCCGTGGCCAAGTATATCAGAAAGTGCTAAGGATTTGATAAAAAAAATGTTGGATAAGGACCCTGAGAAAAGAATCTCTGCTCATGAAGTCTTATGTCACCCTTGGATTGTTGATGATAGTGTTGCCCCTGACAAACCTCTGGACCCTGCTGTTTTGACACGCCTAAAGCATTTCTCAACAATGAATAAACTTCAGAAGATGGCATTACGTATCATAGCAGAAAGACTTTCAGAGGAAGAAATAGGCGGATTAAAAGAGTTATTTAAAATGATTGATGAAGACAATAGTGGGACAATCACTTTTGAGGAACTCAAGGATAGTTTGAAAAGTGTGGGCTGTGATCTCATGGAATCTGAAATTAAATCCCTTATGGAAGCGGCTGATATAGACAACAATGGAACAATAGACTATGGTGAATTTCTCGCTGCTACACTGCACTTGAATAAGATGGAACGAGAAGAGAATTTGGTTGCTGCTTTTGCCTATTTTGATAAAGATGGTAGTGGCTACATCACCATTGAAGAGATTCAACAGGCTTGTAAAGACTTTGGCCTTGGTAATATGCACCTGGATGAGATAATCAATGAGATTGATCAAGACAACGATGGGAGAATTAATTATTCAGAGTTTGCAGCAATGATGAGAAAGGGTGGTCCAGATGTTGGTAGGAGCAGAAAAGGCAATTATACAGCTTCAATATTGGATGTGCTTGTGGAGTGA 1449 0.4382 MSSKCKNVMPHETPNVKEHYVIGNKVLGKGHVATTYVCTHKETKKRYACKTIPKAKLLKQEDYDEVWREIQVMHHLSEHPNVARVQGSYEDKFAVHLVMEMCRGGELFYRITQKGHYSEKEAAKLMKTIVGVVEACHSLGVIHRDLKPENFLFDSHSETATIKVIDFGFSVFYKPGQTFSDIVGTCYYMAPEVLRKQTGPEVDVWSAGVILYILLRGHPPFWAKSESAIFQEILHGEIDFVSDPWPSISESAKDLIKKMLDKDPEKRISAHEVLCHPWIVDDSVAPDKPLDPAVLTRLKHFSTMNKLQKMALRIIAERLSEEEIGGLKELFKMIDEDNSGTITFEELKDSLKSVGCDLMESEIKSLMEAADIDNNGTIDYGEFLAATLHLNKMEREENLVAAFAYFDKDGSGYITIEEIQQACKDFGLGNMHLDEIINEIDQDNDGRINYSEFAAMMRKGGPDVGRSRKGNYTASILDVLVE* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1943 482 ProSitePatterns EF-hand calcium-binding domain. 371 383 IPR018247 -
Gso10g1943 482 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1943 482 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
Gso10g1943 482 SUPERFAMILY EF-hand 318 458 IPR011992 -
Gso10g1943 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Gso10g1943 482 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Gso10g1943 482 ProSiteProfiles EF-hand calcium-binding domain profile. 432 463 IPR002048 GO:0005509
Gso10g1943 482 PANTHER BNAA09G05220D PROTEIN 6 469 - -
Gso10g1943 482 Gene3D - 287 460 - -
Gso10g1943 482 Pfam EF-hand domain pair 397 458 IPR002048 GO:0005509
Gso10g1943 482 Pfam EF-hand domain pair 327 387 IPR002048 GO:0005509
Gso10g1943 482 CDD STKc_CAMK 19 278 - -
Gso10g1943 482 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Gso10g1943 482 ProSiteProfiles Protein kinase domain profile. 21 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1943 482 SMART efh_1 326 354 IPR002048 GO:0005509
Gso10g1943 482 SMART efh_1 432 460 IPR002048 GO:0005509
Gso10g1943 482 SMART efh_1 362 390 IPR002048 GO:0005509
Gso10g1943 482 SMART efh_1 398 426 IPR002048 GO:0005509
Gso10g1943 482 SMART serkin_6 20 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1943 482 ProSitePatterns EF-hand calcium-binding domain. 335 347 IPR018247 -
Gso10g1943 482 Gene3D Phosphorylase Kinase; domain 1 22 106 - -
Gso10g1943 482 SUPERFAMILY Protein kinase-like (PK-like) 11 306 IPR011009 -
Gso10g1943 482 ProSiteProfiles EF-hand calcium-binding domain profile. 322 357 IPR002048 GO:0005509
Gso10g1943 482 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Gso10g1943 482 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 469 - -
Gso10g1943 482 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Gso10g1943 482 CDD EFh 327 386 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1943 Gso-Chr10 46385388 46389678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1943 7 468 EF-hand Containing Proteins AT4G09570 72.944 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso10g1943 Pkinase 2.5e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1943 K13412 - gmx:100811596 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1414 20 44326970 44332179 Gso10g1943 10 46385388 46389678 GST