Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1940 ATGTCATTAACCCAAATTCCTGAGAGATCATCATCAATTGACATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCCACAGAAGACGAGCTTGTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAGCAGAATGAGTGGTACTTTTTCAGCCATAAAGACAAGAAGTATCCAACAGGGACAAGAACTAACAGGGCAACTGCTGCTGGATTCTGGAAAGCAACGGGAAGAGACAAGGCTGTTATGTCCAAAAATAGAATCATAGGAATGAGGAAGACCTTGGTGTTCTACAAAGGACGTGCTCCTAATGGAAGGAAAACAGACTGGATTATGCATGAATATAGGCATCAAACTTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCCAGGCTTTGACCACCCATGGTGCAGTACTAGTAGTCAACAACAACACTTTTTCAGAGACCAAATTCAAAGCTATTCATCAAGACCCTTATCAATTGCTGACATTTTGGATGAAACAAATAATGTGCCTCACCCTAATGCTGAAGGTACAAGTTTTAGTCACCCCTTCAGCTCGGATCATCAGCAACACCTGAATAATCTTCTATCAAACCAAACTGTGGCTATTATGGACAAACAACTCATTGAGCTTCCACAGCTAGATAGTCCCACTGCAAGTTTGGCAATCAAAGAATGTAACCAACAACAACATAATGGCTTAACAAATGAGGAATATTGCAGTGATGAAAGGAGTAACAATAGCAATGCACAAGGGATCGATTGGAAGAGCTTGGACAACTTGTTTGGGTCTCAATTGAGTGATAATGCAGCTTATTTTTCACATCCAAACTTGCCCTTGATGATGCCCCATAACCATGATCAAGCTAGTCATATCCTTGGATGCTTCCCTGATTCTTCATAA 1041 0.4169 MSLTQIPERSSSIDMESCVPPGFRFHPTEDELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRPGFDHPWCSTSSQQQHFFRDQIQSYSSRPLSIADILDETNNVPHPNAEGTSFSHPFSSDHQQHLNNLLSNQTVAIMDKQLIELPQLDSPTASLAIKECNQQQHNGLTNEEYCSDERSNNSNAQGIDWKSLDNLFGSQLSDNAAYFSHPNLPLMMPHNHDQASHILGCFPDSS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1940 346 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 17 326 - -
Gso10g1940 346 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 17 326 - -
Gso10g1940 346 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Gso10g1940 346 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Gso10g1940 346 ProSiteProfiles NAC domain profile. 19 168 IPR003441 GO:0003677|GO:0006355
Gso10g1940 346 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1940 Gso-Chr10 46357231 46362384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1940 15 345 NAC Transcription Factor Family AT1G71930 53.977 3.09e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso10g1940 NAM 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1940 - - gmx:100811057 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1417 20 44352235 44357300 Gso10g1940 10 46357231 46362384 GST