Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1930 ATGGATCCAAAAGGAAGCTTATGCGCTAAAAACTGCACAAGGACCTCTTCCTTAACTTCTCCTGGGAATGGACTACAAACAAATTTGTCCTCTGATCCTCCCTCTTTCTATGGGGTCAGGATTGAATCACCTTTCAAAGAATTCATCCAACCCTCTCCTCCAACTCAATCTGTACTTCCAGGTGAATCTAATGCAGATATTGATATCCCTGACCAGGAAAATTGTCCACTGAGTAACTCATCACATACCAGTAAACTCCAAGATTGGAATCCAAGTGCAATGTTGAATAACCTTTCCTTCCTTGAAGAAAAGATTCATCAGCTTCAGGATCTAGTGCATGTAATTGTTAATAAAAAGTGCCAACCTTTTGGACAACCTCATGAACTGGTGACTCAGGAACAGCAGCTCATCACAGCCGATCTTACATCGATCATTGTTCAATTGATCTCTACTGCTGGTAGTCTTCTCCCCTCTGTTAGGCACACCCTCACAAACACAAATCCCTTGGTTGGCCAGCTTGACCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGAACCAAGTAGTGGTATTAGGCCACAAAATAACAGTGGAAATAAACTGTTTGATCAGTCCACTCAGAATGATCTACCAAATAAATTGGAAATGGAACAAAACTACAATATGGAAGAGCATGAGCCAAAAGATGAAGAAGATGCGGATGAGGGAGAAAATCTTCCACCCGGTTCCTACGAGATTTTGCAATTAGAAAAAGAAGAAATCCTCGCTCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGACAAGTACAAAACTCCTGCAGCTCTTGCAAAACCACACAAAGAAACCGGGTCTGAACCAAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACCATTTTGTGTGTCAAAAACCACTACAAGAGAACACACTGTGACAAGAGCTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTATTCCAAGGCCATACACCTGCTATTCCTTTGGATGAAACCAAAGGAGTGGCTGAGCCACCTGATATCCAGAACAGAGAAAGCAACAATAAGGTAGAAAGTATTAATTTCTGTTTTGGATCAAATCCTTCAAGTGAAAACGTAGTTCAAAACATCATGGACATGAAAGGTAATATTGATGATCCCATGAATTATTTCTCATCGTTGAACTTCGAAGGCTGTAACTTTGGGGCGTTTAATGAATTCTCCCAACCTCCATTTGAAGATTCAGAAGCTTCTTTCTCTTTCCCCATGTCGGGATCCTATAATTATGCTCCCAAATTTGATAGCGACAATTTATAA 1524 0.414 MDPKGSLCAKNCTRTSSLTSPGNGLQTNLSSDPPSFYGVRIESPFKEFIQPSPPTQSVLPGESNADIDIPDQENCPLSNSSHTSKLQDWNPSAMLNNLSFLEEKIHQLQDLVHVIVNKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNTNPLVGQLDQLHGINLPFGSEPSSGIRPQNNSGNKLFDQSTQNDLPNKLEMEQNYNMEEHEPKDEEDADEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDKYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDETKGVAEPPDIQNRESNNKVESINFCFGSNPSSENVVQNIMDMKGNIDDPMNYFSSLNFEGCNFGAFNEFSQPPFEDSEASFSFPMSGSYNYAPKFDSDNL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1930 507 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 7 494 IPR044300 GO:0010044|GO:0010447
Gso10g1930 507 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Gso10g1930 507 MobiDBLite consensus disorder prediction 12 33 - -
Gso10g1930 507 Gene3D Classic Zinc Finger 244 314 - -
Gso10g1930 507 SUPERFAMILY beta-beta-alpha zinc fingers 259 282 IPR036236 -
Gso10g1930 507 SMART c2h2final6 260 282 IPR013087 -
Gso10g1930 507 SMART c2h2final6 347 369 IPR013087 -
Gso10g1930 507 SMART c2h2final6 309 342 IPR013087 -
Gso10g1930 507 MobiDBLite consensus disorder prediction 187 211 - -
Gso10g1930 507 MobiDBLite consensus disorder prediction 181 211 - -
Gso10g1930 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Gso10g1930 507 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 7 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1930 Gso-Chr10 46269285 46272049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1930 228 501 C2H2 Transcription Factor Family AT1G34370 68.929 2.34e-135 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g1930 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1930 - - gmx:100170687 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1426 20 44445690 44448535 Gso10g1930 10 46269285 46272049 GST