Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1928 ATGGAAGATTCAGAGGAGGATGAGCTTTTGAATCTTAGCCTTTCAGTTGCTGCTAATAGGGAAAGGAAAAAGAAGGGAAAGACTACGATTAGGGAACATCACGTTTCCATGACTACTACTACTACAACTAGGAATTCCTATGAAAGCTACCATGAAGGGAAGATCTTTAGGCTTCTCCAAATGAGGGAGCAGATGCTGAGACAAGACCATAGGAGGAAAGGTGTTGTGGAAGATGGCAATGGCCTCCCTTTGATCCATTTGTTGCTCTCAACCGCAACTTCAGTTGATGACAACAACATGGACTCATCCTTAGAGAATCTCACTGATTTATACCAAACCGTTTCCGTAACTGGTGACTCGGTTCAACGTGTTGTGGCCTATTTCGTTGATGGTTTGGCAGCAAGGCTTCTCACAAAGAAATCTCCATTCTATGACATGCTCATGGAGGAACCTACAACCGAAGAAGAGTTTCTTGCATTCACGGATCTCTACAGGGTTTCACCTTACTTCCAATTTGCACATTTCACAGCAAACCAAGCCATTTTGGAGGCCTTTGAGAAAGAGGAAGAGAGGAACAACCGTGCTTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCCTCTCTCATTCAATCTCTTTCAGAAAAAGCAACAAGTGGAAACCGCATATCCCTGAGGATAACTGGTTTTGGGAAGAGTCTCAAGGAGCTTCAAGAAACCGAGTCTAGGTTGGTTAGTTTCTCAAAGGGTTTTGGAAGCCTCGTGTTTGAGTTTCAAGGGCTTCTAAGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAGAACGAGACCGTGGCTGTCAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTCATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTTAACCCCTCCATTGTTGTGGTGGTGGAGCAAGAAGGTAGCAGGAGTCCTAGGAGCTTCTTGTCGAGGTTCACAGACTCCTTGCACTACTTTGCAGCCATGTTTGATTCACTTGATGATTGTCTTCCACTTGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACAATGATGTGGATGGTGGTGTGGATTGCCCCAAGTATGAGAGGATGGAAGCATGGAAGGCTAGAATGGAGAATCATGGGTTTGTTGCCACAAAAATAAGCTCAAAGTCTATGATCCAAGCAAAACTGTTGCTGAAGATGAGGACTCATTTTTGTCCTCTTCAGTTTGAGGAAGAGGGAGGTGGGGGTTTCAGGGTTTCTGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTGCTTACTGTCTCAGCATGGCAATCAGTCTGA 1398 0.4421 MEDSEEDELLNLSLSVAANRERKKKGKTTIREHHVSMTTTTTTRNSYESYHEGKIFRLLQMREQMLRQDHRRKGVVEDGNGLPLIHLLLSTATSVDDNNMDSSLENLTDLYQTVSVTGDSVQRVVAYFVDGLAARLLTKKSPFYDMLMEEPTTEEEFLAFTDLYRVSPYFQFAHFTANQAILEAFEKEEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKSLKELQETESRLVSFSKGFGSLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDVDGGVDCPKYERMEAWKARMENHGFVATKISSKSMIQAKLLLKMRTHFCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1928 465 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 463 IPR005202 -
Gso10g1928 465 ProSiteProfiles GRAS family profile. 75 463 IPR005202 -
Gso10g1928 465 Pfam GRAS domain family 84 463 IPR005202 -
Gso10g1928 465 Coils Coil 354 374 - -
Gso10g1928 465 PANTHER OSJNBA0084A10.13 PROTEIN 8 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1928 Gso-Chr10 46251270 46252928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1928 35 462 GRAS Transcription Factor Family AT3G54220 34.096 4.16e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso10g1928 GRAS 4.5e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1928 - - gmx:100809458 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1427 20 44467382 44469068 Gso10g1928 10 46251270 46252928 GST
Gso16g1261 16 31904484 31906400 Gso10g1928 10 46251270 46252928 PCT
Gso2g0620 2 6429500 6431377 Gso10g1928 10 46251270 46252928 PCT
Gso10g1928 10 46251270 46252928 Gso16g1261 16 31904484 31906400 PCT
Gso10g1928 10 46251270 46252928 Gso2g0620 2 6429500 6431377 PCT