Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1926 ATGTCTGGCAATTCGAATTGCAGTGTTTACATAGGCAATCTGGATGAGAGGGTGACGGACAGGGTCTTGTATGATATATTAATTCAAGCAGGAAGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCAGAGAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCTGTCCGGCTTTTCTCAGGCCTCATAACACTGTACAACAGAACACTTAAGTTTGCGATATCTGGGAGAGACAAAACTACCTCTAATGGTTCTACAGCAATTACCCCCACATCAAATTCTTCTCAAAGACCAAGGCCATATCCAGTGTCTATAAACAATTCAGAAAATTTTCAGCACTCTGCTAGGCTATCAACTCCTGACCGATTTTCAGATCATCCAGTAAATTATTCCCAAGTTCTTCCTTCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTATAGTGGCAACAATTATGAATACAGCAGGAGAGCTTTTGGGGCAACATTGGATAGCATTAGCCGTTCTAGGTCACGCCGCTTTGATTAA 561 0.4153 MSGNSNCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVRLFSGLITLYNRTLKFAISGRDKTTSNGSTAITPTSNSSQRPRPYPVSINNSENFQHSARLSTPDRFSDHPVNYSQVLPSRVTDQSSGYGSHYSGNNYEYSRRAFGATLDSISRSRSRRFD* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1926 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Gso10g1926 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Gso10g1926 186 SMART rrm1_1 8 82 IPR000504 GO:0003723
Gso10g1926 186 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 184 - -
Gso10g1926 186 PANTHER OS01G0876500 PROTEIN 1 184 - -
Gso10g1926 186 SUPERFAMILY RNA-binding domain, RBD 4 82 IPR035979 GO:0003676
Gso10g1926 186 MobiDBLite consensus disorder prediction 88 159 - -
Gso10g1926 186 Gene3D - 2 97 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1926 Gso-Chr10 46230215 46233194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1926 8 89 Eukaryotic Initiation Factors Gene Family AT1G49760 30.488 3.60e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1926 K12831 - gmx:100784532 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1431 20 44496810 44500093 Gso10g1926 10 46230215 46233194 GST