Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1892 ATGTTTATGGTTATGGATTCAGCAGAAAGGTGCTTAGATTCTCAACTATGGCATGCCTGTGCCGGTGCCATGGTTCAGATGCCACCCCTCAACACAAAAGTCTTCTACTTTCCCCAGGGCCACGCTGAACACGCTCATGGGAAGGTGGAATATTTCGGGAAAAACCATCAAACCCGTGTTCCACCACTCATCCCTTGCAGACTCTCTGCCATGAAATACATGGCAGACCCTGACACCGACGAGGTTTATGTCAAAATGAGACTCACCCCTTTGAGGGAACATGAATTATTGGATTCACAAGATGATTGTTTCTTGGGAAACACAAACAGTGGAGGAGTTGAGAATCAAGAGAAGCCTCCAACTTCTTTTGCTAAGACTCTCACACAATCTGATGCAAACAATGGTGGAGGCTTCTCAGTGCCTCGTTACTGTGCTGAAACCATTTTCCCAAGGTTGGATTATTCGGCTGAGCCTCCTGTTCAGACCATCATTGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCACATCTATAGAGGGACTCCAAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTCGTGAACCAGAAGAGGCTTGTTGCTGGGGACTCTATTGTGTTTCTGAGGGCAGAAAATGGGGATCTATGTGTTGGGATAAGGAGGGCCAAGAAGGGGATTGGTGGAGGGACTGAGTTCTCTTCTGGATGGAATAACCCTCTCTTTGGTGGTGGTGGTGGCTTCTTGTGTGGGAGTGAGAGTAGTTTTGTGAGTGGTGCAAAAAGTGGTGGTGATCATGAGATAGTGGGAAGAGTGGCTCCTGAATCTGTTGTTGAGGCTGTGACTTGTGCTGTTAATGGAAGACCCTTTGAGGTTGTGTACTATCCGAGGGCTAGTTCACCGGAGTTTTGTGTTAAGGCTTCTGTTGTGAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGAATGAGATTCAAAATGCCCTTTGAGACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCATTTCTTCTGTTCAGGTTGCAGATCCCATCCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGGTGGTGTGGGATGAGCCAGATTTACTTCAAAATGTCAAGTGTGTGAACCCTTGGCTGGTTGAACTAGTCTCAAACATGCCTACATTCAATCTCTCTGCATACTCACCTCCTAGAAAGAAACAACGTTTTCTTCAGGATCCTTATTTTCAAGTCATCAACCAACTCCCAATGCCATCATTCTCTAGCAACCTTCTCAATTACACCAACTCTCTTTGCACCATTCAAGATAGTAATAGTTCTGGAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCATCTGATTTTCCCTTCAACAAGCTCCCAGCAGACATGCTTCTAGGTGGTTTCTCAAGGCTTGACCATGCAGCAGCACAGCCTATTAGGCCACCTTGTGGAACCTATAAGAACAACACCACTACTAAGGCCAATGTTGGCATTTCTTGCTTGTTGACAGTGGGAAATCCTGGCCAGAATTTCAAGGAATCCAATGAAACAAAAGCACCTCACATCTTGTTATTTGGAAAACTCATTCAGACTGAGCAAAAGAGTTCAAACACTAGCTCTGCCAATACTAATGGTAATAGTGTATCTGAGGGGAATTCACACAAGACATCTAATGCTTCCGATGGCCTAGGTTCTGGTTTGCATCAAGGTAGTCCAATTGAGAACAATTCTGATGGAGGGTCTCCCTGGTACAAGGACCAACACAAGTCTGATCTTGGAACTGACAATGTTAACACATTGTGTATTGCTTTATAA 1839 0.4562 MFMVMDSAERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVEYFGKNHQTRVPPLIPCRLSAMKYMADPDTDEVYVKMRLTPLREHELLDSQDDCFLGNTNSGGVENQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGTEFSSGWNNPLFGGGGGFLCGSESSFVSGAKSGGDHEIVGRVAPESVVEAVTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFLQDPYFQVINQLPMPSFSSNLLNYTNSLCTIQDSNSSGGIQGARHAQFGLSPSDFPFNKLPADMLLGGFSRLDHAAAQPIRPPCGTYKNNTTTKANVGISCLLTVGNPGQNFKESNETKAPHILLFGKLIQTEQKSSNTSSANTNGNSVSEGNSHKTSNASDGLGSGLHQGSPIENNSDGGSPWYKDQHKSDLGTDNVNTLCIAL* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1892 612 MobiDBLite consensus disorder prediction 542 591 - -
Gso10g1892 612 SUPERFAMILY DNA-binding pseudobarrel domain 116 224 IPR015300 -
Gso10g1892 612 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677
Gso10g1892 612 Gene3D - 319 392 - -
Gso10g1892 612 PANTHER AUXIN RESPONSE FACTOR 16 6 581 - -
Gso10g1892 612 Gene3D - 121 225 IPR015300 -
Gso10g1892 612 SMART B3_2 123 225 IPR003340 GO:0003677
Gso10g1892 612 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso10g1892 612 CDD B3_DNA 122 223 IPR003340 GO:0003677
Gso10g1892 612 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Gso10g1892 612 MobiDBLite consensus disorder prediction 542 598 - -
Gso10g1892 612 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 581 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1892 Gso-Chr10 45818961 45822473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1892 9 598 B3 DNA Binding Superfamily AT4G30080 56.645 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso10g1892 B3 2.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1892 - - gmx:100803053 1256.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1458 20 44857244 44860393 Gso10g1892 10 45818961 45822473 GST