Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso10g1891 | ATGGTTGGACCTAACTTCATGGATGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCCGTCGAGGACGTCGACGGCGGCGCTGCCACCTTGCCTTCCGTCTCCGCCGGAAACAGCAACTCGCTGGCTAGCATCTGGCCCTCCGAGTCCGACTCGTTTCCCGCCTCCGACTCGGTGTTTTCCGGCAACAGTGCTTCGGACCTCTCGGCGGAGCTATCCGTTCCGTATGAAGACATTGTCCAATTGGAATGGTTGTCCAACTTTGTGGAGGATTCCTTTTGTGGGGGGAGCCTAACAATGAACAAAGTGGAAGAGCCATCATGTACCACTAAGGAGGACTCAGTCAACACCCAATTTCACACATCAAGCCCAGTTTCTGTCCTCGAAAGTAGCAGTTCTTGCTCTGGTGGCAAGACTTTGCCACCTCGCAGTCCAGAGATTTACATCCCTGTGCCGTGTGGACGTGCACGCAGCAAGCGTCCACGTCCAGCAACCTTCAATCCTAGGCCTGCCATGAACCTTATTTCCCCTGCCTCCTCTTTTGTTGGGGAGAATATGCAGCCTAATGTCATATCATCCAAGGCCTCTTCAGATTCTGAGAATTTTGCTGAGTCTCAACTTGTTCCCAAGATGCCGAAGCTAGCTTCTGGGGAGCCTAAGAAGAAAAAGAAAGTGAAGGTGCCACTTCCAGTAGCTCCAGCTGATAACAATCAAAATGCCTCACAACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTATGCAATGCATGTGGTGTTCGTTACAAGTCCGGCCGGCTCTTCCCCGAATACCGGCCTGCTGCAAGTCCAACTTTTTGCCCATCCGTGCACTCCAATTCTCATAAGAAGGTCCTGGAAATGAGATGCAGGGGATTTGACAAATCTGGTTTTGCAATCAATTCAGCTGCCTCACCTGAACTCATTCCAAACACTAACAGCAGCCTTACCCTGGAGTACATGTGA | 1044 | 0.5115 | MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGAATLPSVSAGNSNSLASIWPSESDSFPASDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMNKVEEPSCTTKEDSVNTQFHTSSPVSVLESSSSCSGGKTLPPRSPEIYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENMQPNVISSKASSDSENFAESQLVPKMPKLASGEPKKKKKVKVPLPVAPADNNQNASQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCRGFDKSGFAINSAASPELIPNTNSSLTLEYM* | 348 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso10g1891 | 347 | MobiDBLite | consensus disorder prediction | 115 | 145 | - | - | |
Gso10g1891 | 347 | MobiDBLite | consensus disorder prediction | 115 | 177 | - | - | |
Gso10g1891 | 347 | MobiDBLite | consensus disorder prediction | 198 | 232 | - | - | |
Gso10g1891 | 347 | ProSiteProfiles | GATA-type zinc finger domain profile. | 247 | 283 | IPR000679 | GO:0006355|GO:0043565 | |
Gso10g1891 | 347 | ProSitePatterns | GATA-type zinc finger domain. | 253 | 278 | IPR000679 | GO:0006355|GO:0043565 | |
Gso10g1891 | 347 | SMART | GATA_3 | 247 | 297 | IPR000679 | GO:0006355|GO:0043565 | |
Gso10g1891 | 347 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 347 | - | - | |
Gso10g1891 | 347 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 251 | 310 | - | - | |
Gso10g1891 | 347 | Pfam | GATA zinc finger | 253 | 286 | IPR000679 | GO:0006355|GO:0043565 | |
Gso10g1891 | 347 | CDD | ZnF_GATA | 252 | 309 | IPR000679 | GO:0006355|GO:0043565 | |
Gso10g1891 | 347 | PIRSF | Txn_fac_GATA_plant | 3 | 339 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Gso10g1891 | 347 | Gene3D | - | 248 | 297 | IPR013088 | GO:0006355|GO:0008270 | |
Gso10g1891 | 347 | PANTHER | GATA TRANSCRIPTION FACTOR 8 | 1 | 347 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso10g1891 | Gso-Chr10 | 45800692 | 45804350 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso10g1891 | 19 | 315 | C2C2-Gata Transcription Factor Family | AT4G32890 | 38.284 | 3.53e-47 | 160 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Gso10g1891 | GATA | 5.9e-15 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso10g1891 | - | - | gmx:100815693 | 681.404 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso20g1459 | 20 | 44879141 | 44882569 | Gso10g1891 | 10 | 45800692 | 45804350 | GST | |
Gso16g1249 | 16 | 31788301 | 31794542 | Gso10g1891 | 10 | 45800692 | 45804350 | PCT | |
Gso2g0613 | 2 | 6358636 | 6364602 | Gso10g1891 | 10 | 45800692 | 45804350 | PCT | |
Gso10g1891 | 10 | 45800692 | 45804350 | Gso16g1249 | 16 | 31788301 | 31794542 | PCT | |
Gso10g1891 | 10 | 45800692 | 45804350 | Gso2g0613 | 2 | 6358636 | 6364602 | PCT |