Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1891 ATGGTTGGACCTAACTTCATGGATGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCCGTCGAGGACGTCGACGGCGGCGCTGCCACCTTGCCTTCCGTCTCCGCCGGAAACAGCAACTCGCTGGCTAGCATCTGGCCCTCCGAGTCCGACTCGTTTCCCGCCTCCGACTCGGTGTTTTCCGGCAACAGTGCTTCGGACCTCTCGGCGGAGCTATCCGTTCCGTATGAAGACATTGTCCAATTGGAATGGTTGTCCAACTTTGTGGAGGATTCCTTTTGTGGGGGGAGCCTAACAATGAACAAAGTGGAAGAGCCATCATGTACCACTAAGGAGGACTCAGTCAACACCCAATTTCACACATCAAGCCCAGTTTCTGTCCTCGAAAGTAGCAGTTCTTGCTCTGGTGGCAAGACTTTGCCACCTCGCAGTCCAGAGATTTACATCCCTGTGCCGTGTGGACGTGCACGCAGCAAGCGTCCACGTCCAGCAACCTTCAATCCTAGGCCTGCCATGAACCTTATTTCCCCTGCCTCCTCTTTTGTTGGGGAGAATATGCAGCCTAATGTCATATCATCCAAGGCCTCTTCAGATTCTGAGAATTTTGCTGAGTCTCAACTTGTTCCCAAGATGCCGAAGCTAGCTTCTGGGGAGCCTAAGAAGAAAAAGAAAGTGAAGGTGCCACTTCCAGTAGCTCCAGCTGATAACAATCAAAATGCCTCACAACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTATGCAATGCATGTGGTGTTCGTTACAAGTCCGGCCGGCTCTTCCCCGAATACCGGCCTGCTGCAAGTCCAACTTTTTGCCCATCCGTGCACTCCAATTCTCATAAGAAGGTCCTGGAAATGAGATGCAGGGGATTTGACAAATCTGGTTTTGCAATCAATTCAGCTGCCTCACCTGAACTCATTCCAAACACTAACAGCAGCCTTACCCTGGAGTACATGTGA 1044 0.5115 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGAATLPSVSAGNSNSLASIWPSESDSFPASDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMNKVEEPSCTTKEDSVNTQFHTSSPVSVLESSSSCSGGKTLPPRSPEIYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENMQPNVISSKASSDSENFAESQLVPKMPKLASGEPKKKKKVKVPLPVAPADNNQNASQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCRGFDKSGFAINSAASPELIPNTNSSLTLEYM* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1891 347 MobiDBLite consensus disorder prediction 115 145 - -
Gso10g1891 347 MobiDBLite consensus disorder prediction 115 177 - -
Gso10g1891 347 MobiDBLite consensus disorder prediction 198 232 - -
Gso10g1891 347 ProSiteProfiles GATA-type zinc finger domain profile. 247 283 IPR000679 GO:0006355|GO:0043565
Gso10g1891 347 ProSitePatterns GATA-type zinc finger domain. 253 278 IPR000679 GO:0006355|GO:0043565
Gso10g1891 347 SMART GATA_3 247 297 IPR000679 GO:0006355|GO:0043565
Gso10g1891 347 PANTHER GATA TRANSCRIPTION FACTOR 1 347 - -
Gso10g1891 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 251 310 - -
Gso10g1891 347 Pfam GATA zinc finger 253 286 IPR000679 GO:0006355|GO:0043565
Gso10g1891 347 CDD ZnF_GATA 252 309 IPR000679 GO:0006355|GO:0043565
Gso10g1891 347 PIRSF Txn_fac_GATA_plant 3 339 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gso10g1891 347 Gene3D - 248 297 IPR013088 GO:0006355|GO:0008270
Gso10g1891 347 PANTHER GATA TRANSCRIPTION FACTOR 8 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1891 Gso-Chr10 45800692 45804350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1891 19 315 C2C2-Gata Transcription Factor Family AT4G32890 38.284 3.53e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso10g1891 GATA 5.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1891 - - gmx:100815693 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1459 20 44879141 44882569 Gso10g1891 10 45800692 45804350 GST
Gso16g1249 16 31788301 31794542 Gso10g1891 10 45800692 45804350 PCT
Gso2g0613 2 6358636 6364602 Gso10g1891 10 45800692 45804350 PCT
Gso10g1891 10 45800692 45804350 Gso16g1249 16 31788301 31794542 PCT
Gso10g1891 10 45800692 45804350 Gso2g0613 2 6358636 6364602 PCT