Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1885 ATGGGGTTCTTGAGCAGTTTCTTGGGGGTTTTTGGTTTTGCCGTTGGAATACCTCTTGGCCTCTTGGTTGGGTTCTTTCTCTTTGTCTACTCAGAAACCAAACGTGTCAAGGACCCTGTTGTTAGGCCAATTAGTGAATTAGGCCCAAATTCTCTGCAGGAACTTCTGCCCGAGATTCCTCTCTGGGTGAAGACGCCTGATTATGAACGAGTTGATTGGTTGAACAAGTTTTTGTTGGATATGTGGCCCTTCTTAGACACGGCAATTTGTAAGATTATTAGAAGCACGACTCAACCGATATTTGCTGAATACATTGGGAAGTATCAGATCAAAGCGATTGATTTTGATGAGTTAAGCCTTGGTACTCTTCCTCCTACTGTCTGTGGTATGAAAGTTTTAGAAACAAATGAAAAGGAATTGGTCATGGAACAAGTTATCAAATGGGCTGGTAATCCAAACATAGTGGTGTCCTTGTATGTGTCATCTTTGAAGATCACCATTCAGTTGGTAGACTTGCAAATATTTGCAGCACCACGGATTACTTTAAGACCTTTGGTGCCTACATTTCCATGTTTTGCAAATATTGTGGTATCTTTGATGGAGAAGCCTCATGTGGATTTTGGGATGAACGTATCAGGAGGGGACATCATGTCAATACCTGGTCTCTATAGATTTGTACAGGAAACAATAAAAAAACAAGTTGCAAACCTCTATCTCTGGCCTCAAACCCTGGAAATTCCTATTCTTGATGAATCAACGGTGGCAATAAAGAAGCCTGTGGGGATATTACATGTGAATGTGGTTCGTGCACAAAAGCTTTTAAAGATGGATTTGTTGGGTACTTCTGATCCTTATGTTAAACTAAGCTTGACAGGAGACAAACTTCCAGCAAAGAAAACCACTGTCAAGAGAAAGAATTTGAATCCTGAGTGGAATGAGAAGTTCAAGATTGTTGTAAAGGACCCTCAATCTCAAGTTCTCCAATTACAAGTTTATGACTGGGACAAGGTTGGTGGACATGACAAGCTGGGAATGCAGTTAGTCCCTCTTAAAGTGCTAAATCCGTACGAGAACAAAGAATTTATACTTGATTTACTCAAGGACACAAATCTCAATGAAACTCCACATAAGAAGCCTAGAGGGAAAATTGTGGTGGACTTGACTTTTGTTCCTTTCAAAGAAGATAGTAACAAGTTTGGTGGACCTTCAGAAGGATATAGCAGGAAGGAAAGTGGAATTGATATTGTATCCGATGATGAGGTCCAAGAAGGAGCAGGTTTGCTTTCAATTGTGATCCAAGAGGCTGAAGAGGTTGAGGGGGACCATCACAACAACCCATTTGCAGTGCTGACCTTTAGAGGCGAAAAGAAAAGGACAAAGACGATGAAGAAAACTCGACACCCGCGTTGGAATGAAGAATTCCAATTCATGCTAGAGGAGCCTCCTCTACATGAGAAGATACATATTGAGGTTATGAGCAAGAGGAAGAACTTTAGTTTTCTGCCAAAGGAATCATTGGGGCATGTGGAGATTAACCTAAGAGATGTGGTGCACAATGGTCGCATTAACGATAAGTACCATCTAATAAATTCAAGGAATGGAGTGATGCATGTTGAGATAAGATGGAAGGTGGTTTAA 1638 0.409 MGFLSSFLGVFGFAVGIPLGLLVGFFLFVYSETKRVKDPVVRPISELGPNSLQELLPEIPLWVKTPDYERVDWLNKFLLDMWPFLDTAICKIIRSTTQPIFAEYIGKYQIKAIDFDELSLGTLPPTVCGMKVLETNEKELVMEQVIKWAGNPNIVVSLYVSSLKITIQLVDLQIFAAPRITLRPLVPTFPCFANIVVSLMEKPHVDFGMNVSGGDIMSIPGLYRFVQETIKKQVANLYLWPQTLEIPILDESTVAIKKPVGILHVNVVRAQKLLKMDLLGTSDPYVKLSLTGDKLPAKKTTVKRKNLNPEWNEKFKIVVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKVLNPYENKEFILDLLKDTNLNETPHKKPRGKIVVDLTFVPFKEDSNKFGGPSEGYSRKESGIDIVSDDEVQEGAGLLSIVIQEAEEVEGDHHNNPFAVLTFRGEKKRTKTMKKTRHPRWNEEFQFMLEEPPLHEKIHIEVMSKRKNFSFLPKESLGHVEINLRDVVHNGRINDKYHLINSRNGVMHVEIRWKVV* 546
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1885 545 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Gso10g1885 545 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Gso10g1885 545 ProSiteProfiles C2 domain profile. 407 526 IPR000008 -
Gso10g1885 545 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 258 393 IPR035892 -
Gso10g1885 545 Pfam C2 domain 261 356 IPR000008 -
Gso10g1885 545 Pfam C2 domain 427 527 IPR000008 -
Gso10g1885 545 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 426 542 IPR035892 -
Gso10g1885 545 Gene3D C2 domain 427 545 IPR035892 -
Gso10g1885 545 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 544 IPR045050 GO:0008289
Gso10g1885 545 CDD C2 428 529 - -
Gso10g1885 545 PANTHER SYNAPTOTAGMIN-3 1 544 - -
Gso10g1885 545 SMART C2_3c 262 362 IPR000008 -
Gso10g1885 545 SMART C2_3c 427 525 IPR000008 -
Gso10g1885 545 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Gso10g1885 545 PRINTS C2 domain signature 278 290 IPR000008 -
Gso10g1885 545 PRINTS C2 domain signature 305 318 IPR000008 -
Gso10g1885 545 PRINTS C2 domain signature 327 335 IPR000008 -
Gso10g1885 545 CDD C2 263 365 - -
Gso10g1885 545 Gene3D C2 domain 256 411 IPR035892 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso10g1885 Gso-Chr10 45730790 45736132 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1885 258 530 Lipid Metabolism Gene Families AT3G61300 26.117 1.65e-09 58.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1885 - - gmx:100813029 1077
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1465 20 44943712 44949148 Gso10g1885 10 45730790 45736132 GST