Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1882 ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGGGTTGCCCCTGGCTCCGGAATTTCGCCCTACAGACACTGAATTTGCCGACCCAATTGCTTATATTTCGAAGATTGAGAAGGAAGCTGCCAACTTTGGGATTTGTAAGATTATCCCACCGTTTCCCAAACCTTCAAAAAAATACGTTTTTTCCAATTTGAATAGGTCACTCTTGAAGTGCCCTGATTTTGGTCCAGATAATAGTTCATTAGGTGTTTGTAATTCATCGAAAACCAGTTCTGGGGATGGTAGTAGTGACGGGGTGTTGCGAGCCGTGTTTACTACAAGGCATCAAGAACTGGGGCAGAGTCAGAGTGTGAAAAAAGCCAAAGGGACAGTTCAGAATCCACTGTCAGGTGTTCATAAGCAAGTATGGCAAAGTGGGGAGGCTTATACTCTGGAGCAGTTTGAGTCTAAATCGAAGTCTTTTGCGAAAAGTGTGCTAGGATCGGTGAAGGATGTTTCTCCTCTGGTTATAGAGTCTATGTTTTGGAAGGCAACTTTAGAGAAGCCTATATATGTAGAGTATGCAAATGACGTTCCTGGGTCTGCTTTTGAAGAGTCCAAGGGTCAATTTCATTATAGTCATAGAAGGCAAAGGAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGAAACGGGTTGCGTAAGAGATACCCAAACCGATGAGACCAAGGTTGCTTCTGTCCAAAGTCATTCGGACACATGTTTGCAGATGGCCAAATCAAGTACAACTGTGTCAACATTTTCATCAAATGATGATTCACAATCTTCTAAGGAAAAGAGTTCAGATGCCAGCAATGAAATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGCTCGTCTGGCTCACTAACACGTTTTATGCCTGATGATATTCCTGGTGTCACGTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACTGGCTCATCAAAGACCTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAGTCATCCGCACTGAGGGTTATAGTGGTAACATTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACGACTCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAACTCAGCACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTACGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATTTCAAGAGTGCCAAGAACACTATTACCTGGCGTGCGTAGTTCTCGTCTAAGAGACCGTCAGAAAGAAGAGAGGGAGTTTTTAGTAAAACAGGCTTTTATAGAAGACATGCTGCAGGAAAACAAGCTTCTATCCATTCTTCTTGGGAAGGAAGCAACTAAAAAAGCTGTTTTATGGAATGCTGATTTACTGCCTGATTCCAGCAAAGATTTTCAGTTGCCTGATTTAACTTCTACTACTGGATCCTCTATGGCACATATGTCAAATATTAGTTCTGCAGAAAAGAGTGGTCATTATCTGCTTGATGAAATGAGTTTGTATATGGAGAATTTGACTAATTTAGATCTTGGTGGTGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGATACAACCAACCGAGAAATTGATAATGGAACTTCTTCCTGATAATCATCTAGTTCAAGTTTCCTCTCCAGACTCTACTGCTTGCGTTCATAGTTCCATCTCAAGGGATCTTTCTGTTTCCGAACTTTCATCAGTAAAGGAGTTGCCAGATCAATCATTAAACAAGTGCAATAAATGTTGGAACACCTCCAGTAAGTTTTTGAGGCCTCGGATTTTCTGCCTGGAGCATGCTGTTCAAATATTTGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTACCAGAAAATAAAGGCACATGCCAGGGCAGTTGCGGAAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGATACTGCATCCCCAGAAAATTTGACTTTGATAGATCTGGCAATTGATGGTGAAGAACATGATGAATGTGAAGACTGGACATCTAAACTAGGCATTAACCTACGGAATTGTGTCCATGCAAGAAATAACTCTCCATCTAAACAAGTTCCTTGGATACTAGGGACGCTGTTGTATGATAAATGCCTTGCTTCAAAATCTTTAGCTTTAAATTGGCAATCACGGAGATCTCGATCAAAAAGGTCAAGTTGTTTGGCTCAGACTAAACCGTGTGACAGTATTGAGAGAAAGAAGGAGGATCGGTTTTATGGAAGAATAGATGACTCCCCTGCTGAAAAGAAGCTACTTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGGTGTTTCCCTGTAGCAAGCATGGTCAGTGAATTCCAAGAGAAGTCCAAAAATTTGTCAGCTACTTTGAATGGGGATCATAATAATTGTTTTTCTAAAACTGATCTTGAAGCTAAGAATTTCAGGAGTGATTATGCATTGTCATGTGTCTCTGCTTCTACCAAAATGTCTCCAATACATCCTGAAATCCAGATTGCTGAAATGCCTGCTAGCACGAGATTAAACGATGCTAAACCGCAACCTTCCAATTCCATTCCTGATCATACTTTAATGACTGAAGAAGTTGGAGCAGAGATTGAGAAGCAAACCATACAGGAATCAGATGTAGACAGAAATAATGATTTAACACTCGGTCATTCTAAGATGCATTGCAATACCAGTGTCTCAGAAATATGTGGCAAGGAGAGCCAAGGTTGTCAGGACAAGAAATGTTCTAGCTCACTTACAAATGCAACTGATAGAAATATTGAAATGATTAGAATTTCTGAAATTACAGAAGCAATTATCATCGATAGCAGGTGTAATAGCTTAATTTTGAATGGTGAAGGGCATCAAGAATATCAGTCTACCTGCAAAAGCAACAATGAGGAAGCTGCTTTATCACCTGCTTCATTGGTAAATCAATCTACCCTGGCATCTGTGGTTGGAAGTTTTGGAAGTCCAAATAATAATTATACTGCAGAAAAAATTAGCAGTCCTATTTTCCTAGAAAAGACAACTGAGGAAGAAATTGATTCTTTAAGCGAAAGGGACAAGGAACCTCTAATTGATGACAGACCAATTAGCGAACATACTCTAAAAGAAGTTTGTGAAGTTCAAAGAGAGCTTTATGCTTCTGCAGACTTGCATAATACCATAGTCTTGGATTATGAGATGCAACATGAAACTCAGGGTGGAAAAGATAGCAGAAAAGAAATAAATCAGTCAACTCTTGTTTCAACAATTACAAGAGGGGAATATGCTGAAGGGTTGAATGATGAAGTGATTCCAAAGTCTGTGGAGCAGTGCCAGATTGAAAATATGAATAAAATTAATGTGGAACCTGTTTCTAGCTATGTTGCAAAAGGTGAAAATAAATGTGTAACTTCATCAGAATTAGGATGTTCTGAAGTTTTAGTGGAAACCTATCCTAAAGACTCCTGTATTCAATTGATTTCAGATAAAGAAAAAGAAACGGAAATCCAGTCAGTGAGTATAATTGATGAGGAATTTTGCTCTGGCACAGATACATCGATAGATGACTCTTCATCAATCCAGGAATGTTCTAAAATTGAGAAAGAGAGCTGTGTTACAGAAAACATAAATGGAATCAAAGCCAATTTGTCAAAAGATAATAGGGAGCTGGAAAGCTGCGAGTTGACTACAGCAGTTCCCAGATCAAATGCCAGGAAGAATAAAAAGAGAAAAGTGAAAAATACAACGAAGAATCAATCCAATATTGACAACTTTATTAGAAGTCCGTGTGAGGGGTTGAGGCCAAGAGCTGGGAAGATTGCCACTGACAAAAGTGGGGTGGAAATCAACCAAGTTGACAAGGAAAATCAGGTGGCTAAAAGGGCAAGGAGATCTTCTGAAGGTTTGGTTCCTCACAAAAATAAAAAGGATGATGTTAAAAAGCCCCATAAGTGTGACCTTGATGGTTGCCAAATGAGTTTCAAGACTAAGGCTGAGTTACTACTGCATAAACGAAACCTTTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGCTCCCACAAATATGCTTTACTTCACCAGCGTGTTCATGATGATGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCTTGGGCAAGGACAGAGCATATTCGCGTACATACTGGGGAGAAGCCTTATCACTGCAAGGTCGAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGACGGAAAACGGGGCACCATGTGAAACCTCCTGCTTGA 4614 0.4044 MGSVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEAANFGICKIIPPFPKPSKKYVFSNLNRSLLKCPDFGPDNSSLGVCNSSKTSSGDGSSDGVLRAVFTTRHQELGQSQSVKKAKGTVQNPLSGVHKQVWQSGEAYTLEQFESKSKSFAKSVLGSVKDVSPLVIESMFWKATLEKPIYVEYANDVPGSAFEESKGQFHYSHRRQRKRTYYKSRLDSSDCKQTETGCVRDTQTDETKVASVQSHSDTCLQMAKSSTTVSTFSSNDDSQSSKEKSSDASNEMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYSGNIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQHPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSILLGKEATKKAVLWNADLLPDSSKDFQLPDLTSTTGSSMAHMSNISSAEKSGHYLLDEMSLYMENLTNLDLGGDDLPCHFQTDSGALACVGCGILGFPFMTVIQPTEKLIMELLPDNHLVQVSSPDSTACVHSSISRDLSVSELSSVKELPDQSLNKCNKCWNTSSKFLRPRIFCLEHAVQIFEMLQSKGGANVLIICHSDYQKIKAHARAVAEEIHSAFDYNEVPLDTASPENLTLIDLAIDGEEHDECEDWTSKLGINLRNCVHARNNSPSKQVPWILGTLLYDKCLASKSLALNWQSRRSRSKRSSCLAQTKPCDSIERKKEDRFYGRIDDSPAEKKLLQYSRRKFKSKQRCFPVASMVSEFQEKSKNLSATLNGDHNNCFSKTDLEAKNFRSDYALSCVSASTKMSPIHPEIQIAEMPASTRLNDAKPQPSNSIPDHTLMTEEVGAEIEKQTIQESDVDRNNDLTLGHSKMHCNTSVSEICGKESQGCQDKKCSSSLTNATDRNIEMIRISEITEAIIIDSRCNSLILNGEGHQEYQSTCKSNNEEAALSPASLVNQSTLASVVGSFGSPNNNYTAEKISSPIFLEKTTEEEIDSLSERDKEPLIDDRPISEHTLKEVCEVQRELYASADLHNTIVLDYEMQHETQGGKDSRKEINQSTLVSTITRGEYAEGLNDEVIPKSVEQCQIENMNKINVEPVSSYVAKGENKCVTSSELGCSEVLVETYPKDSCIQLISDKEKETEIQSVSIIDEEFCSGTDTSIDDSSSIQECSKIEKESCVTENINGIKANLSKDNRELESCELTTAVPRSNARKNKKRKVKNTTKNQSNIDNFIRSPCEGLRPRAGKIATDKSGVEINQVDKENQVAKRARRSSEGLVPHKNKKDDVKKPHKCDLDGCQMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHHVKPPA* 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1882 1537 ProSiteProfiles Zinc finger C2H2 type domain profile. 1505 1536 IPR013087 -
Gso10g1882 1537 SUPERFAMILY beta-beta-alpha zinc fingers 1485 1535 IPR036236 -
Gso10g1882 1537 SUPERFAMILY Clavaminate synthase-like 293 459 - -
Gso10g1882 1537 ProSitePatterns Zinc finger C2H2 type domain signature. 1447 1469 IPR013087 -
Gso10g1882 1537 ProSiteProfiles Zinc finger C2H2 type domain profile. 1445 1474 IPR013087 -
Gso10g1882 1537 MobiDBLite consensus disorder prediction 1396 1420 - -
Gso10g1882 1537 SMART cupin_9 293 462 IPR003347 -
Gso10g1882 1537 ProSitePatterns Zinc finger C2H2 type domain signature. 1507 1531 IPR013087 -
Gso10g1882 1537 ProSitePatterns Zinc finger C2H2 type domain signature. 1477 1499 IPR013087 -
Gso10g1882 1537 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Gso10g1882 1537 SMART JmjN_1 15 55 IPR003349 -
Gso10g1882 1537 Pfam JmjC domain, hydroxylase 326 445 IPR003347 -
Gso10g1882 1537 Pfam jmjN domain 17 50 IPR003349 -
Gso10g1882 1537 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1526 - -
Gso10g1882 1537 SMART c2h2final6 1505 1531 IPR013087 -
Gso10g1882 1537 SMART c2h2final6 1445 1469 IPR013087 -
Gso10g1882 1537 SMART c2h2final6 1475 1499 IPR013087 -
Gso10g1882 1537 SMART c2h2final6 1422 1444 IPR013087 -
Gso10g1882 1537 Gene3D Cupin 9 466 - -
Gso10g1882 1537 ProSiteProfiles Zinc finger C2H2 type domain profile. 1475 1504 IPR013087 -
Gso10g1882 1537 SUPERFAMILY beta-beta-alpha zinc fingers 1446 1482 IPR036236 -
Gso10g1882 1537 Gene3D Classic Zinc Finger 1442 1531 - -
Gso10g1882 1537 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1526 - -
Gso10g1882 1537 ProSiteProfiles JmjC domain profile. 293 462 IPR003347 -
Gso10g1882 1537 MobiDBLite consensus disorder prediction 263 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1882 Gso-Chr10 45690285 45700188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1882 1 903 C2H2 Transcription Factor Family AT5G04240 55.184 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g1882 JmjC 1.9e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1882 - - gmx:100799861 2987.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1467 20 44987840 44997713 Gso10g1882 10 45690285 45700188 GST