Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1878 ATGTGTAGGTGGAGCACAAACCCAATGCATTTGAGGGTGCACATTATTGTGGTATTGAGCTTGTTCCTTGGGATGATACAGTTACAGTGCCAACAAGTGAATGACTATGATCAGATTGATAGCCCTGCTGTTCTTCCTCTCCTTACTCAGCTTGTCTATAGTCAAATCTCCAACTTGACATCAATTCTCAGTCAGGAAATTAGCAAAGAGTCTACTTTCTGTGTCAAAGATCCGGATGCTGATTGGAATCAAGCATTTAATTTTTCATCTGATTTGGGCTTCTTGGCGTCTTGCATTAAGAAGACTAGAGGAGATATTGCAAAACGTTTGTGTACAGCAGCAGAAGTGAAGTTTTTCTTAAATAGTTTGTTGGAGAAATCTGTAAGTGCCAATTATTTAAAGCCTAACAAGAACTGCAATTTAACCTCATGGGTCCCCGGTTGTGAGCCGGGATGGGCCTGTAGTGTTCCCTCAAGCCAGAAGGTTGACCTCAAAAATTCAAAGGAGATACCCGCAAGAACTTTGAATTGTCAAGCCTGTTGTGAAGGCTTCTTTTGTCCTCATGGGATTACATGCATGATACCATGCCCTCTAGGTTCCTATTGCCCTCTTGCTACACTCAATAAAACAACTGGCGTATGCGAACCATATCTTTATCAGCTGCCTCCAATGCAGACAAACCATACCTGTGGTGGAGCAAATGTTTGGGCCGACGTTAGTAGCAGTAGTGAGATATTTTGCTCAGCTGGATCATATTGTCCAACAACCACAAAAAGAATTCCCTGCAGTAGTGGGCATTACTGCAGGATGGGCTCCACATCTGAGAAAAGATGCTTCAAGTTGAGTTCATGTAATTCAAACACCGCAACCCAAAATATGCATGCATATGGAATTATGCTCATTGCTGCTTTGAGTACTTTGCTACTCATTATTTACAATTGTTCTGACCAAGTTCTAACTACTAGGGAAAGAAGAGTGGCCAAATCTAGAGAAGCAGCAGCTAGAAGTGCAAGGAAGACTGCAAATGCACGCCAAAGATGGCGATTTGCAAAAGATGCCACTAAGAAGGGTGCAATGGGGTTGCAAGCTCAACTATCACGCACCTTCAAGAAGGATGCTGCAAATCTGGAAAAAGTTAAAATTTTGAATCAAGCAACTTCTGAAGTGGGTGTTGAATTGTTATCACATTCACGACCTACAACTTCAAGCATGGTTGCAACTTCATCTATGGCAACAAAGGAAAAGGGAAAAGAACCCAGCAGTCTAATGCTGATGATACACGAAATTGAAAATGATCCAGATATAAATGACAACCTTCATACAGAAATAGAAACTAGAGATACAGGTGTTAGAGAAAATGTGCCAAAGGGAAAACAACCACATACTCATAGCCAAATTTTTAAGTATGCATATTCTCAACTTGAAAAAGAGAAGGCTCAACAAAAAGAAAACAAGAAGCTTACCTTCTCGGGGGTAATTAAAATGGCTACAAACACTGATAAAAGGAAAAGGCCTTTAATGGAGATTTCTTTCAAGGACCTGACTCTTACATTGAAAGCTCAAAACAAACATATATTGAGATATGTTACTGGGAAAATTAAACCTGGCCGCATCACTGCTGTCATGGGTCCATCAGGGGCTGGCAAGACAACATTTCTTTCAGCTCTAGCCGGAAAAGCATTGGGATGCTTGGTCACTGGTTCAATTCTTATAAATGGAAGGAATGAATCAATCCACTCCTTTAAGAAAATTACTGGCTTTGTGCCACAAGATGATGTAGTTCATGGAAATCTGACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGCTATCTGCTGACTTGTCAAAACCAGAAAAAGTTCTAGTTGTTGAAAGAGTTATTGAATTCTTAGGGCTTCAATCTGTGCGCAATGCCTTGGTTGGAACTGTGGAAAAAAGAGGGATCTCTGGAGGCCAAAGGAAACGTGTAAATGTTGGGTTGGAAATGGTTATGGAACCTTCACTCTTGATCTTGGATGAACCCACATCTGGCTTGGACAGTGCATCATCTCAGCTCCTTCTTAGAGCACTAAGACGCGAAGCTCTTGAGGGAGTTAACATTTGCATGGTGGTTCACCAACCCAGCTATGCTTTGTTCAAGATGTTTGATGACCTGATACTTCTGGGAAAAGGTGGTCTTACTGTCTATCATGGATCTGCCAAGAAAGTTGAAGAATACTTTTCAGGCGTGGGGATCAATGTTCCGGAGCGGATTAATCCTCCTGATTACTTCATTGACATTTTGGAGGGCATAACAACCCCTGGAGGGGGCTCAGGACTCAGTTATAAAGAGCTTCCGGTAAGATGGATGCTTCATAATGGATATCCAATACCTCTTGATATGAGGCAGAATGCAGTTCAATTTGATATGTCCCAGAGTGTAAATTCAGCAAATGAAATAGATTCCAATGGATCTGGTCATGTCGGAAAAACCTTTGCTGGAGAATTATGGCAAGATATGAGAAACAATGTGGAACTGAAGAGGGAGAAGATAAGACTCAATTTTTTTAAATCCAAGGATTTATCTAACCGGGAAACTCCTGGTGTTTTCAAGCAATACAAGTACTTTCTTATACGGGTTGGGAAGCAGCGACTACGAGAAGCTAGGATCCAAGCCATTGATTATCTTATTTTGTTACTTGCTGGAGCCTGCTTAGGATCACTTTCCAAATCAAGTGACCAAACATTTGGTGCAGCTGGGTACACCCATACGGTGATTGGTGTATCTCTTCTGTGCAAAATAGCGGCCTTGAGATCATTTTCTCTGGATAAATTACACTATTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCTTATTTCCTCTCTAAAGACACAATTGATCATTTTAATACACTGATCAAGCCTGTGGTGTATCTTTCTATGTTCTATTTCTTCACCAATCCGAGATCAACTTTTGCAGATAATTATGTTGTGCTGCTTTGTCTTGTATACTGTGTCACTGGCATAGCATATGCATTGTCCATATTTTTTGAACCTGGTGCAGCCCAGCTGTGGTCAGTACTTCTGCCAGTTGTTTTGACTCTCATTGCAACACAACCAAAAGATAGTAAAGTTTTGAAGAATATAGCTAATTTATGCTACTCTAAGTGGGCTTTACAAGCCTTAGTTGTTGCAAATGCTGAAAGGTATCAGGGAGTGTGGCTCATAACTCGTTGTGGTTCACTTTTGAAAACTGGCTATAATCTTCACGATTGGAGTTTGTGCATATCTATCCTCATTCTAATGGGTGTAATTTGCCGGGCTATAGCATTTTTCTGTATGGTCACCTTCCGAAAGAAGTAA 3351 0.4115 MCRWSTNPMHLRVHIIVVLSLFLGMIQLQCQQVNDYDQIDSPAVLPLLTQLVYSQISNLTSILSQEISKESTFCVKDPDADWNQAFNFSSDLGFLASCIKKTRGDIAKRLCTAAEVKFFLNSLLEKSVSANYLKPNKNCNLTSWVPGCEPGWACSVPSSQKVDLKNSKEIPARTLNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGVCEPYLYQLPPMQTNHTCGGANVWADVSSSSEIFCSAGSYCPTTTKRIPCSSGHYCRMGSTSEKRCFKLSSCNSNTATQNMHAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANARQRWRFAKDATKKGAMGLQAQLSRTFKKDAANLEKVKILNQATSEVGVELLSHSRPTTSSMVATSSMATKEKGKEPSSLMLMIHEIENDPDINDNLHTEIETRDTGVRENVPKGKQPHTHSQIFKYAYSQLEKEKAQQKENKKLTFSGVIKMATNTDKRKRPLMEISFKDLTLTLKAQNKHILRYVTGKIKPGRITAVMGPSGAGKTTFLSALAGKALGCLVTGSILINGRNESIHSFKKITGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNALVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLGKGGLTVYHGSAKKVEEYFSGVGINVPERINPPDYFIDILEGITTPGGGSGLSYKELPVRWMLHNGYPIPLDMRQNAVQFDMSQSVNSANEIDSNGSGHVGKTFAGELWQDMRNNVELKREKIRLNFFKSKDLSNRETPGVFKQYKYFLIRVGKQRLREARIQAIDYLILLLAGACLGSLSKSSDQTFGAAGYTHTVIGVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDHFNTLIKPVVYLSMFYFFTNPRSTFADNYVVLLCLVYCVTGIAYALSIFFEPGAAQLWSVLLPVVLTLIATQPKDSKVLKNIANLCYSKWALQALVVANAERYQGVWLITRCGSLLKTGYNLHDWSLCISILILMGVICRAIAFFCMVTFRKK* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1878 1116 ProSitePatterns ABC transporters family signature. 650 664 IPR017871 GO:0005524
Gso10g1878 1116 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 37 1113 - -
Gso10g1878 1116 Pfam ABC transporter 528 678 IPR003439 GO:0005524
Gso10g1878 1116 CDD ABCG_EPDR 507 733 - -
Gso10g1878 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 742 IPR027417 -
Gso10g1878 1116 Gene3D - 507 744 IPR027417 -
Gso10g1878 1116 Pfam ABC-2 type transporter 707 1116 IPR043926 GO:0140359
Gso10g1878 1116 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 509 751 IPR003439 GO:0005524
Gso10g1878 1116 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 37 1113 - -
Gso10g1878 1116 SMART AAA_5 535 727 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1878 Gso-Chr10 45660174 45668673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1878 533 728 Calmodulin-binding Proteins AT2G36910 25.116 6.49e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1878 - - gmx:100798807 2154.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1471 20 45014464 45026198 Gso10g1878 10 45660174 45668673 GST