Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1872 ATGGGTGGGAGCGAGAGCTCGAAGGGTGTGGTTATGAGTCGTTTGGTTGAGTGCATCAAGGAGATTTCTGGGTTGCCAGAGAGTCAGAACTTGTGCAAGAAGGTGTATGGGAATTTGGTTCGCAGGGTGAAGCTTTTGAGTCCTCTCTTTGAGGAATTGAAGGATAATAGTGATGAGTCCCTCAGCGATGAACAACTTCAAAGCTTTGACTCTCTCTTTGTTGCTTTGGGTTCAGCTAAGACCCTTTTAAAGGATGTGAACCAAGGGAGTAAGCTTTATCAGGCTTTGCGGAGGAATGATACAGCAGATAAGTTCCAAAAAGTAACTGAAAAAATTGAAGCTGTGCTCAGTGAAATTCCTTACAATAAACTTGACATATCGGATGAAGTTCGAGAACAGATTGAACTGGTGCATGCTCAATTCAAAAGAGCCAAAGCTCAAACAGAATTTGCTGATATACAACTAGACCTGGATATGGCAGTGGCACAAAAAGAAAAGGACCCTGGTCCTGCTGTACTGAAGAGACTTTCTGAAAAGTTGCATCTAAGGACAATAAATGACCTAAGGAAAGAGTCTAGTGAATTGCATGAATTGTTCATCACAAGTGGTGGAGAACTCGGCGATTCTTTTGAAATGATCACATCCCTTCTCAGCAAACTGAGGGAATGTGTGCTCACAGAAAATCCTGAAGTTGATTCCAGTGAATGTGAAAAATTGTCAGTTAAGCACAGGTCTCCCATGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTAATTGTCTCCACTGGTCAGACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACACAGCAGACACTTGTGCATACAGCCCTTACCCCTAACTATGTTTTGAAGAGTTTGATTGCTTTGTGGTGTGAAAGCAACGGTATTGAGCTACCAAAGAAACAAGGGAACTGTAGAACAAAGAAATGTGGTGGCAGCAGTCTTTCAGATTGTGATCGAACTGCTATTAGTGCTTTATTGGATAAACTAACGAGTAACGATATAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGGTTGCTGGCTAAAAGGAATGCAGACAACCGAGTATGCATTGCTGAGGCAGGAGCAATACCACCTCTTGTAGATCTGTTGTCTTCTTCAGACCCTCGAACTCAGGAGCATGCTGTTACAGCGCTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAATGCTGGAGCCATACCGGATATTGTAGATGTACTGAAAAATGGCAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCGGTTCTAGACGAGAACAAGGTGCAAATAGGTGCAGCTGGAGCTATCCCTGCTCTAATAAAGTTACTTTGTGAAGGTACTCCTAGAGGTAAGAAGGATGCTGCTACTGCTATCTTCAACCTATCTATTTATCAGGGAAATAAAGCAAGAGCTGTAAAAGCTGGTATAGTAGCCCCACTGATACAATTTCTGACGGATGCTGGGGGTGGAATGGTAGATGAAGCACTAGCTATTATGGCAATCCTTGCAAGCCACCATGAAGGCAGGGTAGCGATCGGTCAGGCCGAGCCAATTCATATTCTTGTTGAGGTTATACGAACCGGCTCTCCACGCAATCGAGAGAATGCTGCTGCTGTCTTGTGGTCACTATGCACCGGAGATCCACTGCAATTAAAACTAGCGAAAGAACATGGTGCAGAAGCAGCACTGCAGGAGTTGTCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGCATATTGGAACTCTTGCAGCGAATGGAAGGGGTTGATAATCTGCAGAGTTCATAG 1899 0.4365 MGGSESSKGVVMSRLVECIKEISGLPESQNLCKKVYGNLVRRVKLLSPLFEELKDNSDESLSDEQLQSFDSLFVALGSAKTLLKDVNQGSKLYQALRRNDTADKFQKVTEKIEAVLSEIPYNKLDISDEVREQIELVHAQFKRAKAQTEFADIQLDLDMAVAQKEKDPGPAVLKRLSEKLHLRTINDLRKESSELHELFITSGGELGDSFEMITSLLSKLRECVLTENPEVDSSECEKLSVKHRSPMIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGNCRTKKCGGSSLSDCDRTAISALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVAPLIQFLTDAGGGMVDEALAIMAILASHHEGRVAIGQAEPIHILVEVIRTGSPRNRENAAAVLWSLCTGDPLQLKLAKEHGAEAALQELSENGTDRAKRKAGSILELLQRMEGVDNLQSS* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1872 632 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Gso10g1872 632 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Gso10g1872 632 PANTHER U BOX DOMAIN-CONTAINING 11 624 - -
Gso10g1872 632 SUPERFAMILY ARM repeat 344 620 IPR016024 -
Gso10g1872 632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 321 IPR013083 -
Gso10g1872 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Gso10g1872 632 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515
Gso10g1872 632 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515
Gso10g1872 632 SUPERFAMILY RING/U-box 248 323 - -
Gso10g1872 632 SMART arm_5 540 580 IPR000225 GO:0005515
Gso10g1872 632 SMART arm_5 499 539 IPR000225 GO:0005515
Gso10g1872 632 SMART arm_5 376 416 IPR000225 GO:0005515
Gso10g1872 632 SMART arm_5 417 457 IPR000225 GO:0005515
Gso10g1872 632 SMART arm_5 458 498 IPR000225 GO:0005515
Gso10g1872 632 Gene3D - 334 626 IPR011989 -
Gso10g1872 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515
Gso10g1872 632 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 11 624 - -
Gso10g1872 632 CDD RING-Ubox_PUB 252 294 IPR045210 -
Gso10g1872 632 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Gso10g1872 632 Gene3D - 11 121 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1872 Gso-Chr10 45532168 45536700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1872 11 626 U-box Gene Family AT3G54850 66.234 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1872 - - gmx:100797201 1226.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1478 20 45140334 45144569 Gso10g1872 10 45532168 45536700 GST