Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1856 ATGAAAAGAAAGGCCATGAGTTGTGACAACCGAGATGCTGTGAACAGAGGTGCTTGGTCAGCTGAGGAAGACCAAATCCTTATCAACTACGTTCAAGCCCATGGAGAAGGAAATTGGAGAGAGCTTTCCAAAAGAGCTGGTTTAAAACGACGTGGGAAGAGTTGCAGACTCAGATGGTTGAACTATCTCAAGCCAGATATCAAGAGAGGAAACATTTCTTCGGATGAAGAAGATCTCATCATCAGGCTTCATAGCCTCTTAGGCAATAGGTGGTCTCTTATTGCGGGACGATTACCTGGGCGAACAGATAATGAAATCAAGAACTATTGGAATACTTATTTGAGAAAGAAGGTTGAGCAAAATCACAACTATAACAGTAATCTTCCTGGTCATGATAACATTCCTATCAAATTAAGAATTGAATCTCCACGGCGCTCAAAAAATTCATTGGGTATTGTTATTGATCCTACAAAATCCTCTCACCCAATGACGATTAAATCAATGAGGTGCACCGAGGTTATGATGCCAACGCGATCCGTCAATGATTTTACAACAAGTTGGGATATAAACCCTTCTGCATCTACCCCACAAGATGGCCATGATCATTGCTCAGAAGGTTTCCTCAAACACTTTGGTATTAGTGACGTATTAATGCCATACGAGGATTGCCGTTTTAATGGATATGCTTGCGTCGAAATACCCCAACATTTTGGAGAGGAAGGCTACAAGGTTAATGATGCGATAGGTGAAACACAGTATGGGAATTGGAAGACTGAGGACTACTTTCCACTAGACTATGATGTAGGTTTTTATTTTAAAAGTTGA 825 0.4085 MKRKAMSCDNRDAVNRGAWSAEEDQILINYVQAHGEGNWRELSKRAGLKRRGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEQNHNYNSNLPGHDNIPIKLRIESPRRSKNSLGIVIDPTKSSHPMTIKSMRCTEVMMPTRSVNDFTTSWDINPSASTPQDGHDHCSEGFLKHFGISDVLMPYEDCRFNGYACVEIPQHFGEEGYKVNDAIGETQYGNWKTEDYFPLDYDVGFYFKS* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1856 274 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 271 - -
Gso10g1856 274 CDD SANT 73 114 IPR001005 -
Gso10g1856 274 Gene3D - 73 133 - -
Gso10g1856 274 Gene3D - 16 68 - -
Gso10g1856 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Gso10g1856 274 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 271 - -
Gso10g1856 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Gso10g1856 274 CDD SANT 18 63 IPR001005 -
Gso10g1856 274 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gso10g1856 274 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Gso10g1856 274 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gso10g1856 274 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Gso10g1856 274 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
Gso10g1856 274 SMART sant 68 116 IPR001005 -
Gso10g1856 274 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1856 Gso-Chr10 45350054 45351906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1856 1 118 MYB Transcription Factor Family AT3G13540 66.102 4.62e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g1856 Myb_DNA-binding 7.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1856 K09422 - gmx:100794034 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1488 20 45309914 45311689 Gso10g1856 10 45350054 45351906 GST