Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1847 ATGATACAGGAAGATCAAGGACAGTGTTCTTCTCAAGCGATCAATAACTACCACCAAGCCTATCAAGAGCAGCTTCTCCTTCAGCAACAGATGCAACAACAACAACAAAACAATGATATCTTTGGTGGAGGAGGAGGATTGAACATGTACCCTGGTGCTGAAGTTTCTCCAATCATGAATCATCATCATCAACCATGGTCTATGACTATGCCACATCATCATCACCATCATCAGGTTCATGACCCTTTTCTTGTCCCTCCCCAACCTTCACCCTATGCAAGCTTGTTCAACAGAAGAGGTCCTTCTCTTCATCAGTTTGCATATGATCATCATGGTTCATCTTCTGACCATCTTAGGATCATATCTGAATCCCTTGTTGGACCGGTGGTTCAACCCGGTTCAGCAGTACCCTTTGGCCTCCAAACCGAGTTGGCTAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCCCTTGCAGCTTCGAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGGGAGAGAATCAATAACCATCTTGCTAAGCTCCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAACATGTAAAGGAGCTGAAGCGTCAAACCTCGGTGATAGCAGAAACGAGTCCGGTTCCGACCGAAGCTGATGAGTTAACAGTGGTAGACGAAGCCGATGAAGATGGAAACTCTGTGATCAAAGCCTCATTGTGCTGCGAAGATAGGTCAGATCTGTTCCCTGAACTAATCAAGACATTGAAAGCGTTGAGGCTAAGAACCCTTAAGGCTGAGATAACAACGCTTGGTGGGCGCGTCAAGAACGTGTTGTTCATCACTGGAGAAGAAGCAGATTCAAGCAGTGGCAGCACTGAGGACCATAGCCACCACCACCACCAACAACAACAACAACAGTACTGCATTAACTCAATACAAGAAGCTCTTAAGGCTGTGATGGAGAAGAGCGTTGGGGATCATCATGAGTCTGCTTCTGCCAATATTAAGAGGCAAAGGACCAATATAATATCAATGTCCTAG 1062 0.4576 MIQEDQGQCSSQAINNYHQAYQEQLLLQQQMQQQQQNNDIFGGGGGLNMYPGAEVSPIMNHHHQPWSMTMPHHHHHHQVHDPFLVPPQPSPYASLFNRRGPSLHQFAYDHHGSSSDHLRIISESLVGPVVQPGSAVPFGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSVIAETSPVPTEADELTVVDEADEDGNSVIKASLCCEDRSDLFPELIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEADSSSGSTEDHSHHHHQQQQQQYCINSIQEALKAVMEKSVGDHHESASANIKRQRTNIISMS* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1847 353 SMART finulus 165 214 IPR011598 GO:0046983
Gso10g1847 353 PANTHER TRANSCRIPTION FACTOR BHLH30 71 351 - -
Gso10g1847 353 CDD bHLH_AtAIG1_like 154 230 - -
Gso10g1847 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Gso10g1847 353 MobiDBLite consensus disorder prediction 333 353 - -
Gso10g1847 353 CDD ACT_UUR-ACR-like 245 291 - -
Gso10g1847 353 Pfam Helix-loop-helix DNA-binding domain 162 208 IPR011598 GO:0046983
Gso10g1847 353 PANTHER TRANSCRIPTION FACTOR BHLH30 71 351 IPR045847 GO:0003700|GO:0006355
Gso10g1847 353 MobiDBLite consensus disorder prediction 292 313 - -
Gso10g1847 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 215 IPR036638 GO:0046983
Gso10g1847 353 Gene3D - 154 215 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1847 Gso-Chr10 45176801 45180130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1847 10 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 53.740 5.94e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g1847 HLH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1847 - - gmx:100799872 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1498 20 45502331 45505802 Gso10g1847 10 45176801 45180130 GST