Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1846 ATGCTGGTTCGGAGAAGGGTGATGAGTTGGAGAAGGGTGGCGAAGGCCCTTCAGGCTCTGGTAGCTCATGTCTTACTTTTCACCTTCACTATTACCCTTGCTCTCAAGCTTGATCATGTCATTCGTCACTCATGGTGGAAGGTATTTTTTCCTCTATGGGCTTTTCATGCTGTGGTAGCACGAGGCAGGTTTTCCTTGCCTGCTCCTTCGATGCCTCATGATCGCCAATGGGCTCCTTTTCATTCACTCGTAGCAACTCCACTACTTGTTGCATTTGAGCTACTTCTTTGTATGCATCTCGGGAGCAGTTATGTGATGAATTTAAGGATTGTCTTCATGCCCCTGATATTTCTTGAAATGGCGATTTTGTTTGATAACGTCAGGATGTGTAGGGCTTTGATGCCTGGAGATGATGAAAATCTGACCGACGAAGCAGTATGGGAAACTCTTCCGCACTTCTGGATTTCAATATCCATGGTCTTCTTTATTGCTGCCACTGTGTTCACCCTTCTAAAGATATGTGGTGATGTTGCAGCTCTAGGATGGTGGGACTTGTTTATTAACTTCGGCATTGCACAGTGCTTTGCGTTTCTTGTTTGTACAAAGTGGCACAATCCAACTATTCATGGAGGCTGTCATATTACAGAACCATGCTCATCGTCAAATACCATAAGATACCTAGACTTTAGGACAGGAGGCTTAGTTGTTTACACAGATGAAGATAGACAGCAAAATGGGTTCTGCAATCTACAGGATATCGGTGGGCATATTATGAAAATTCCATTCATTGGTTTCCAAATACTTCTTTTTATGCATTTAGAGGGAACACCATCCAGTGCAAAGAATCTGCCCCACTGGGTCATTTTTTCCCCACTTTTTTTGTTGCAAGGAGCTGGGGTTTTATTTGCAGCTTATAGATTAATAGAGAAGATAGTTCTTCTACTCTACTGTGGAGATATTCCTGAAAGATACTCAGCCATAGCATCAAAATCCCGTGAGTGCTTTGGGTTCTTTCGACGTGGGTCAAGGTTGCTTGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTTTTGTGCTGGGAGTCCTGGGTATAATACTTTCACCCCTGATACGGTGAAGAAAATGCCTAGGGCAGATCTGGTTGAGGAGATTTGGAGACTACAAGCTGCATTGGGCGAGCAGACACAAGTTACAAAATTTAGCCAGGATGAGTATGAAAGACTTCAAAATGAGAAGATCTTATGCAGAATTTGCTTCGAGGAGCAGATTAATGTGGTCCTACTTCCCTGCAGGCATCACATTCTTTGCAGCACTTGCTGCGAAAAATGTAAAAGGTGCCCTGTCTGTCGTGGACCAATTGAAGAAAGGATGCCAGTATATGATGTGTAG 1404 0.4352 MLVRRRVMSWRRVAKALQALVAHVLLFTFTITLALKLDHVIRHSWWKVFFPLWAFHAVVARGRFSLPAPSMPHDRQWAPFHSLVATPLLVAFELLLCMHLGSSYVMNLRIVFMPLIFLEMAILFDNVRMCRALMPGDDENLTDEAVWETLPHFWISISMVFFIAATVFTLLKICGDVAALGWWDLFINFGIAQCFAFLVCTKWHNPTIHGGCHITEPCSSSNTIRYLDFRTGGLVVYTDEDRQQNGFCNLQDIGGHIMKIPFIGFQILLFMHLEGTPSSAKNLPHWVIFSPLFLLQGAGVLFAAYRLIEKIVLLLYCGDIPERYSAIASKSRECFGFFRRGSRLLGWWSIDEGSREEEARLFCAGSPGYNTFTPDTVKKMPRADLVEEIWRLQAALGEQTQVTKFSQDEYERLQNEKILCRICFEEQINVVLLPCRHHILCSTCCEKCKRCPVCRGPIEERMPVYDV* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1846 467 SUPERFAMILY RING/U-box 411 463 - -
Gso10g1846 467 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
Gso10g1846 467 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
Gso10g1846 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 466 IPR013083 -
Gso10g1846 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 467 - -
Gso10g1846 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Gso10g1846 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1846 Gso-Chr10 45154920 45163621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1846 8 467 C3H Transcription Factor Family AT1G73950 62.821 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1846 - - gmx:100794581 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1499 20 45518010 45525424 Gso10g1846 10 45154920 45163621 GST