Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1840 ATGCAGAAAACATACTCTTTCTCCTTCATATCCTCTAGTGGCAGTGATAGTGCCTGCTACTTAGAAGCTGACGAAGTTGACAATGAAGATTCCATTTCCCTCTCCCTTGCCCCTCCTAGCCAGCACCAATTCAAATCCAAGGTCTCTAACCCAAAACACTCTTCTACTATGCCTGATCACCACCAGCAAAACCCTGACCTCATCAGTGGTGTAACAGTGGCCCTCCACATTGGCCTTCCCACCACCAAACCTTCTTCTCCTACTCCGATTCACTGTCGATATTGGATCCCTACTCCTCAACAAATCCTCATTGGGCCCACCCAGTTTTCTTGCACTGTCTGTAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGAGCGGAGTCATTGAGAGGGTCAAAAGCAGGTTCTTCAATGCTGAGGCTACCCTGCTATTGCTGTGAAGAGGGTTGCAAAAACAACATAAACTATCCTAGGTCAAAGCCACTGAAGGATTTCAGGACCCTCCAAACACATTACAAGAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGAAAGTGTCATAAGCCATTTGCAGTGAGAGGAGATTGGAGAACACACGAGAAGAATTGTGGAAAGCTTTGGTTCTGCGTCTGTGGTTCTGATTTCAAGCACAAGAGGTCCCTTAAAGATCATGTCCGTGCATTCGGCAATGGCCATGCTCCACATAACTTATTGAGTGAAGAAAGAGAGAATGAAGGTGGAGATGATGATGACAATGAAGTGGTTGTTTTTACTTTCAAATAA 822 0.4574 MQKTYSFSFISSSGSDSACYLEADEVDNEDSISLSLAPPSQHQFKSKVSNPKHSSTMPDHHQQNPDLISGVTVALHIGLPTTKPSSPTPIHCRYWIPTPQQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGAESLRGSKAGSSMLRLPCYCCEEGCKNNINYPRSKPLKDFRTLQTHYKRKHGGKPFECRKCHKPFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGNGHAPHNLLSEERENEGGDDDDNEVVVFTFK* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1840 273 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Gso10g1840 273 Gene3D Classic Zinc Finger 108 131 - -
Gso10g1840 273 PANTHER ZINC FINGER PROTEIN WIP6 4 264 - -
Gso10g1840 273 SUPERFAMILY beta-beta-alpha zinc fingers 179 214 IPR036236 -
Gso10g1840 273 SUPERFAMILY beta-beta-alpha zinc fingers 92 131 IPR036236 -
Gso10g1840 273 SMART c2h2final6 109 131 IPR013087 -
Gso10g1840 273 SMART c2h2final6 157 189 IPR013087 -
Gso10g1840 273 SMART c2h2final6 194 214 IPR013087 -
Gso10g1840 273 PANTHER ZINC FINGER PROTEIN WIP2 4 264 IPR043584 GO:0003700|GO:0010468
Gso10g1840 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Gso10g1840 273 MobiDBLite consensus disorder prediction 245 264 - -
Gso10g1840 273 MobiDBLite consensus disorder prediction 38 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1840 Gso-Chr10 45093700 45095412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1840 28 250 C2H2 Transcription Factor Family AT1G13290 68.619 4.37e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g1840 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1840 - - gmx:100788243 573.163