Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1825 ATGACAGAACCAAGTGAGACCCTTTTCTCATCTCATCCTGTGTCTTCTGTACACTTTCTTTTCCTTTTTCTCTCTCACTACTGTCTTTGGGGTGAAGATATGGGTGACCCTTATGGGCTACCGGAGGATCTCCGGCGGCTTATACCAGCCAGAAGTACCCATTTGAACCCTTCAAACACACACCTACTTGAGCCACTTTGTCTTCACCATGGTCTCAGTAGTGCTGTTTCTTCTGCTACTACTCCACACACTAGTTTTGACCCCAACATGGTTGGGGACGTTTTCTTCCCTCGTGGTTTCACTCACCACTTTGCTCATCATCATGATTATTCTTCTTCCTCTGGTGTAAACCCTGTTGTTACTGCTACTGCTGCTGCTACTACTACTGTCTCGGATCATGCATTCTGCAGCATGGAGAGTGCAGAGAAAGGGTGGTTTGGGTTTGACTCCGGGAACAACAGGTGGCCTAGACAGGAGACCCTTTCGCTTCTAGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAACAATCAGAAAGCACCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACAAAGGAAGGTAAAGCTAGTAGACAAGATGGGAAGCACTACAGGTTCTTCAGGCAGCTTGAAGCAATATGTGGAGATCAAGCAAATAACGCTCATCATGCTCATGCCTCAACTTCTGATAAAACCCATCGTGCTGGTGGAAACACTGTTACTACTAATCAAAATCAAACCTGCACAATTAACCAAGACTACAATAATGGTAATAATTCTAACAATAACCCCAAATGCTCAGAGTGTTTGAGTATCTCAAATTCATCTGAATTCGAGACATCCTCATCAGAGAACAATGATGAGGATCTCTCAGCCATTGCATTCATGATGAAGCAGCAGTCAAGGGATGAGAAGCAGAAAGGGTTGGATGATCATATTCATAGGCAAAATGATCAATATAGGAGGGTGAGAAAAAGCTGGAGAGCAAAAGTGGAGGAGATAGTGGATTCCCACATGAGGAAGATCATAGAGACTCAAGATGCATGGATGGAGAGAATGCTGAGTGTTGTTGAGCAAAGAGAGCAAGAGATGGCATCTAGGGAGGAAGAAAGGAAGAGAAAAGAGTCAATGTGGCTTGACAAACAGGTTCATGAACTTTGGGCTAAAGAGAAAGCATGGGTTGAAGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACACATTGGGATAGGGATAGGACTTGAAGCATTGCCATTGGTTGAAGAAGAACCACCAAATAAGAACAAGAGCCAAGGAAATTACAATATTGATGCCAATGAGTTTCCCTCTGAGGGTGTGGATCATAATAGAAGTAGTAGCAGTAGGTGGACAGAAATGGAGATTTCAAATTTGATACAACTAAGGACTAGTTTTGAGCAAAGATTCAGAGAAAATAATAATGGGTACTTATTGGAGAATGGGCTTTGGGATGAAATAGCAGCAAAACTGGCTTGTTTGGGGTTTGATAGGAGTGCAAGAGAGTGCAAGCAAATATGGGATGAGATTAGCATCTCTCTGAGAAGGACAGTGGATGAGTGTGATGATGGTGCAAAAAGAAGGCCTTGGTATTTGGGACTTAAGCTGACGGATGATGATGATCTTTGA 1728 0.4282 MTEPSETLFSSHPVSSVHFLFLFLSHYCLWGEDMGDPYGLPEDLRRLIPARSTHLNPSNTHLLEPLCLHHGLSSAVSSATTPHTSFDPNMVGDVFFPRGFTHHFAHHHDYSSSSGVNPVVTATAAATTTVSDHAFCSMESAEKGWFGFDSGNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGDQANNAHHAHASTSDKTHRAGGNTVTTNQNQTCTINQDYNNGNNSNNNPKCSECLSISNSSEFETSSSENNDEDLSAIAFMMKQQSRDEKQKGLDDHIHRQNDQYRRVRKSWRAKVEEIVDSHMRKIIETQDAWMERMLSVVEQREQEMASREEERKRKESMWLDKQVHELWAKEKAWVEARDAALIEVVRKHIGIGIGLEALPLVEEEPPNKNKSQGNYNIDANEFPSEGVDHNRSSSSRWTEMEISNLIQLRTSFEQRFRENNNGYLLENGLWDEIAAKLACLGFDRSARECKQIWDEISISLRRTVDECDDGAKRRPWYLGLKLTDDDDL* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1825 575 MobiDBLite consensus disorder prediction 248 271 - -
Gso10g1825 575 ProSiteProfiles Myb-like domain profile. 153 212 IPR001005 -
Gso10g1825 575 SMART sant 151 214 IPR001005 -
Gso10g1825 575 SMART sant 480 546 IPR001005 -
Gso10g1825 575 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 63 553 - -
Gso10g1825 575 CDD GT1 482 550 - -
Gso10g1825 575 ProSiteProfiles Myb-like domain profile. 476 544 IPR001005 -
Gso10g1825 575 Coils Coil 384 404 - -
Gso10g1825 575 CDD GT1 153 219 - -
Gso10g1825 575 Pfam Myb/SANT-like DNA-binding domain 482 554 IPR044822 -
Gso10g1825 575 Pfam Myb/SANT-like DNA-binding domain 153 240 IPR044822 -
Gso10g1825 575 Gene3D - 155 217 - -
Gso10g1825 575 Gene3D - 484 549 - -
Gso10g1825 575 PANTHER - 63 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1825 Gso-Chr10 44909009 44912018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1825 154 549 Trihelix Transcription Factor Family AT5G03680 42.893 3.90e-88 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso10g1825 Myb_DNA-bind_4 5.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1825 - - gmx:100784522 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1521 20 45759793 45762655 Gso10g1825 10 44909009 44912018 GST