Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1821 ATGGTAAACCTACAAAAGGTTGAACAACATGTTACAACAGAAGGTCAAAGGAAAAAGAATAAGAGGAAGAAGCAAGTTTTGGTTCCTCGTCCTGCATGCTCATGGGTGTATTTTAGTAAAGAGTTTATCAAGGAGTACATTGCTTCCCATCCTGAGTCACCAGGCCTTAAAGCTGCAACAAAGGCTGCCTCAAATGCGTGGAAATCAATGAGCCTTGAAGAGAAGGAAAAGTATGCTAGGCATGCACGTGAAGTGTGGGATGGCTACTTGAGTTCAGGTGCTGCCCCCAACCCCAAGCCAAGGAAACAGACTAAACTGGTAACAAGATGCTCTCCTGGTCGCTTATTCAAAGTGTTACAGCGCCTCACACCTGAGCAGAAGGAGGCAGTTAAGAGCATGGGCTTTGGCAGCCTCCTTGGCCTTAGATGCCGAACGCTTCGACGCAGTTTGTGTCTTTGGTTATTGGAGAGATTTGACACTACTAATTGCAGCTTAGAGATCTGCAATGTGGACGTGCCATTAACTCCAAATGATGTAGAGATGGTATTGGGATTATCAGCCAGTGGTAAAGAAGTGGTGAACTCTGGTCCAGAAGACATGATTTCAGATTTACGTAACAGTTACAACGCGATAAATCATGGAATTTCAGTGCGACTTTTAGAGGAGCAGTTGGCAACTGCAGAGTCTGGAGATGATTTTAAGAGGTCATTTGTACTCTATGTGCTGGGAACGCTTCTGTGCCCAACAGCTAGGCTGGATGTTAGCCCGTCATTCCTCCACTTTTTGACAAATATGGATCTTGTACATCAGTATAACTGGGGTAAATTCTTGCTTGATAGGCTGGTTCGAGAGGTATTGCGCTTCCATCAAGGGAAGCAAAGAACTGTTGGTGGTTGTCTTTTATTTTTGCAGCTTTTCTACTATGAGAACATATCTCTTGAAGGGTCTTCTGCTCCAGTTCCAACGATTGTTCCATATCTGTTTTCTTGGGGAGAGGAGGAGATTGCTGAGAGAGAAAAGCGAGAAAAGGAACTTGGCGGCTATGGTTCTGGGGAGCTAGCAAGCAAGAAGAAGTGCCATCATATGGAGTTCCCTGAGTATAGAGATCATCCAGATGGCCCACTGATCACCACAGAAATCAGTAGAATTGGGCATGGTCCTCTTAGACCAGAATCAAATGAGGAAGACATCCGTGGTTTTCCTAGGAATAGAACCGTGTTGAGTGGAGATGTGGATTTAGTAGTTGAATCAATTGAAGCTCCTTGTCGGAACAAAGAATATGGTTGCAATGAAACTGTGGATTGCATGACTAGCAATGACCATGAAGTGACATGCATCTATTCTCCATGTGTCTGTCCATTTCAAGACTGTAACTATGTTGGGCCATTTGAACAGTTGGCATTGCATTTCAGCAGTAAACACTGGGATTCCGGAAGACAATTCAAATATAATCATCCATTGGCTATCTCTTTACAGATGGATGAACAATTCCTTGTTCTCCAGGCAGAAGAAGATGGGGTTCTTTTTCTCCTCAACAAGGGCACAGAAACTAATGGGAATACAGTGATGATAACCTGTATTGGTCCAAATTCATCAAAAGAAGGATTTATTTATGAGATTGTTTCATGTAGGGGGAGAAGTTCTCTCAGATTAAAGTCTGTAGCTGAGAATTTTCCTGGTCGAATGGAGGATTTCCCCCCAGTAGATTTTCTTTTGATTCCTTTCAATTTTCTTGTGTCTTCTAGGGAGCTCAATGTAGATATTTGTATATGGAATTCTACTGAGCATAATGTAGATTGCTCTTGA 1806 0.4291 MVNLQKVEQHVTTEGQRKKNKRKKQVLVPRPACSWVYFSKEFIKEYIASHPESPGLKAATKAASNAWKSMSLEEKEKYARHAREVWDGYLSSGAAPNPKPRKQTKLVTRCSPGRLFKVLQRLTPEQKEAVKSMGFGSLLGLRCRTLRRSLCLWLLERFDTTNCSLEICNVDVPLTPNDVEMVLGLSASGKEVVNSGPEDMISDLRNSYNAINHGISVRLLEEQLATAESGDDFKRSFVLYVLGTLLCPTARLDVSPSFLHFLTNMDLVHQYNWGKFLLDRLVREVLRFHQGKQRTVGGCLLFLQLFYYENISLEGSSAPVPTIVPYLFSWGEEEIAEREKREKELGGYGSGELASKKKCHHMEFPEYRDHPDGPLITTEISRIGHGPLRPESNEEDIRGFPRNRTVLSGDVDLVVESIEAPCRNKEYGCNETVDCMTSNDHEVTCIYSPCVCPFQDCNYVGPFEQLALHFSSKHWDSGRQFKYNHPLAISLQMDEQFLVLQAEEDGVLFLLNKGTETNGNTVMITCIGPNSSKEGFIYEIVSCRGRSSLRLKSVAENFPGRMEDFPPVDFLLIPFNFLVSSRELNVDICIWNSTEHNVDCS* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1821 601 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 28 84 IPR009071 -
Gso10g1821 601 SUPERFAMILY TRAF domain-like 418 590 - -
Gso10g1821 601 MobiDBLite consensus disorder prediction 1 25 - -
Gso10g1821 601 Gene3D High mobility group box domain 12 91 IPR036910 -
Gso10g1821 601 CDD HMG-box 28 89 - -
Gso10g1821 601 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 470 IPR013083 -
Gso10g1821 601 Pfam Plant mobile domain 175 311 IPR019557 -
Gso10g1821 601 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 2 600 IPR044286 -
Gso10g1821 601 ProSiteProfiles Zinc finger SIAH-type profile. 417 475 IPR013010 GO:0008270
Gso10g1821 601 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 2 2 600 - -
Gso10g1821 601 Pfam Seven in absentia protein family 412 557 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gso10g1821 601 SMART hmgende2 27 98 IPR009071 -
Gso10g1821 601 Pfam HMG (high mobility group) box 29 90 IPR009071 -
Gso10g1821 601 SUPERFAMILY HMG-box 13 89 IPR036910 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gso10g1821 Sina 9.8e-15 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1821 - - gmx:100782920 1208.74