Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1806 ATGGGTGAGATTAAAGAGAACGTTCCTCTTCCGAAGACCAAGCCTTCCACTGAACAGGACGTTACCGATGAGCTAGACCTGAGAATGAAGAAGTATCTTAGAGGAGAAGGTGCTAATTTGGAGGGTTTGAAGGATAAAAAGCTGAAGGGTCAACTAGCTGCTAAGGAAGACTTATATGGAAAATCTGCAAAAGCTGCTGCTAAGGCTGAGAAGTGGCTTATGCCTAGTGAAGGAGGTTATCTGGAGGCTGAAGGCTTGGAGAAGACATGGAGGATCAAACAGGAGGCAATAGCTCACGAAGTAGATATCTCAAGCTCAAGGAAACAATATGATATTATTTTACCAGAACTTGGTCCGTACACTCTGGATTTTACTTCAAGTGGCCGGTATATGGCTGTGAGTGGTCGTAAGGGCCATCTGGGAATTGTGGACATGATAAATCTGAGCATAATTAGAGAGTTTCAGGTAAGGGAAACAGTGCGTGATGTCGCATTTTTGCATAATGAGCTCTTTTTTGCTGCTGCCCAGAAAAAGTACCCATACATCTATAATCGAGAAGGCACAGAACTTCACTGCCTCAAGGAACATGGTCCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTTCTCTTGGCTTCAATCAACAAGTTTGGACAACTTCGTTATCAGGACGTTACAATGGGTTCCATGGTCGGTAATTTTCGAACTGGCTTAGGACGTACAAATGTAATGCAAGTGAACCCCTTCAATGGGGTTGTTTCCTTAGGTCACTCAGGTGGTACTGTTACCATGTGGAAGCCAACCAGTGCTTCTCCACTTGTCAAGATGCTATGTCATCATGGGCCTGTCTCAGCACTGGCATTTCATTCAAATGGCCTCTTGATGGCCACTGCCGGGAAAGATAAAAAAATTAAGCTTTGGGACTTGAGGAAATTTGAGGTTCTTCAAACCTTACCAGGTCATGCAAATACTCTGGATTTTAGTCAAAAAGGCTTGCTTGCTTGCGGTAATGGTTCATTGATACAGATTCTGCGTGATGTTTCTGGTACACAAAATTATTCCAAGTATATGACTCATTCCATGGTGAAAGGTTACCTGATAGGAAAATTGGTATTTCGGCCATATGAAGATGTTCTAGGCATAGGGCATTCCATGGGCTGGTCTAGTATTCTTACTCCAGGAGCAGGAGAACCCAACTTTGACTCATGGGTTGCAAACCCGTTTGAAACTTCTAAGCAGAGGAGAGAAAAGGAAATACGGTCTCTTCTTGATAAGCTTCCACCTGAGACTATCATGCTGGATCCCAGCAAGATTGGTACGGTGAAACCAAGAAGAGAGAGGCCAACAAAGCAAGAGAGGGAGGCTGAAATAGAAGCTGGCGTTGAAGCGGCTAAGGGCATGAAACTGAAAAAGAAGACAAAAGGAAGAAACAAGCCAGGTAAAAGGGTACAGAAAAAGCAAGAGGCAGTTTCTAGAGTGAAGAGGCCCTACTTGGAGCAGAAAATTCAAGAAGAGGAAAGCATATCAAGAAAGAAGCAGAAAACTAGTGAGGATGTTGAACTACCAAAATCACTACAGCGCTTTGCTCGTAAAAAAGCATCATCATGA 1608 0.4341 MGEIKENVPLPKTKPSTEQDVTDELDLRMKKYLRGEGANLEGLKDKKLKGQLAAKEDLYGKSAKAAAKAEKWLMPSEGGYLEAEGLEKTWRIKQEAIAHEVDISSSRKQYDIILPELGPYTLDFTSSGRYMAVSGRKGHLGIVDMINLSIIREFQVRETVRDVAFLHNELFFAAAQKKYPYIYNREGTELHCLKEHGPVLRLQFLENHFLLASINKFGQLRYQDVTMGSMVGNFRTGLGRTNVMQVNPFNGVVSLGHSGGTVTMWKPTSASPLVKMLCHHGPVSALAFHSNGLLMATAGKDKKIKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLIQILRDVSGTQNYSKYMTHSMVKGYLIGKLVFRPYEDVLGIGHSMGWSSILTPGAGEPNFDSWVANPFETSKQRREKEIRSLLDKLPPETIMLDPSKIGTVKPRRERPTKQEREAEIEAGVEAAKGMKLKKKTKGRNKPGKRVQKKQEAVSRVKRPYLEQKIQEEESISRKKQKTSEDVELPKSLQRFARKKASS* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1806 535 PANTHER BNAANNG36350D PROTEIN 10 531 - -
Gso10g1806 535 SUPERFAMILY WD40 repeat-like 113 379 IPR036322 GO:0005515
Gso10g1806 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Gso10g1806 535 PANTHER WD-REPEAT PROTEIN BING4 10 531 IPR040315 -
Gso10g1806 535 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Gso10g1806 535 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Gso10g1806 535 SMART BING4CT_2 355 435 IPR012952 -
Gso10g1806 535 SMART WD40_4 311 345 IPR001680 GO:0005515
Gso10g1806 535 SMART WD40_4 105 144 IPR001680 GO:0005515
Gso10g1806 535 SMART WD40_4 269 308 IPR001680 GO:0005515
Gso10g1806 535 SMART WD40_4 147 184 IPR001680 GO:0005515
Gso10g1806 535 SMART WD40_4 227 266 IPR001680 GO:0005515
Gso10g1806 535 MobiDBLite consensus disorder prediction 466 535 - -
Gso10g1806 535 Gene3D - 88 237 IPR015943 GO:0005515
Gso10g1806 535 MobiDBLite consensus disorder prediction 1 22 - -
Gso10g1806 535 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Gso10g1806 535 Gene3D - 238 353 IPR015943 GO:0005515
Gso10g1806 535 MobiDBLite consensus disorder prediction 482 527 - -
Gso10g1806 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1806 Gso-Chr10 44657543 44664603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1806 160 331 U-box Gene Family AT2G33340 26.230 4.11e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1806 K14768 - gmx:100786818 1037.33