Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1793 ATGACAGATTTTCAGCCGTTACAGCAGAAGCCTGAGCCTGCTGATGCCCATGCCGAGTTTGAGCTTGGACTGGAGGAGTTTATGCGTGGGCACTTGGATGATTGTATGTCGTTTGCTTCGTGTAGCTCGTCCCGTGCACCGGATGATGAGGATGACGAGGGTGATCAGCTGGTTCGGAGGAGAAGGAGGTCTGACCTTGAAGGGGATGATTTGGCTGAGTCGTCGGCTGCACGCCGGCGGCATTCGAGGATTTTGAGCAGGTGGGCTGCACGGCAGGCACAGGAGATGATAACTACCATCGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTCGCGGGGTTGCATACTGTGTCAATGTTGGATTCTTCTTTTCTGAGGGGCTCGCAGTCTCCAACTTCTGGGCAGGAGGGGGCTGTGGAGAGGCCGAGCACTCAGGCATCTGCTATTCTGCAGATGTGGCGTGAGTTGGAAGATGAGCATTTGTTGAACCGGGCGCGTGAAAGGATGAGGGTAAGGTTGCGGCACCAGAGGAATTCTGACTCTCATACCAATGTGTCCAGTACCATGTCTGATAGTCGAGGCAGTGAGAATCAAGGAAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAAACTGGATCAAGGAATGCACATGGGGATCATAATGGGTCTAGCAGGGAGCAATCTCTTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCAGGGATGGATGGAAAGCGGTATTAGTGATCATTCGTCTAATGTGAGTCAGATAAACAATAGCCAGAGAGCAGAATGGCTTGGAGAAACAGAGCGCGAGAGGGTAAGAAATATCAGGGAATGGGTGCAAATGATTAGCCAGCAGAGAGGTTCACGTGGGAGCCGGAGGGATGCTCAAGTAAGTGAGGGTGCCCAAGCTGATCGAGCTCGTGGCTTAGTAGCTGATAATGATGAGAGTCAGCCAGAGCATGTTCGGCGGGACATGTCAAGGTTGCGTGGAAGACAAGCTCTAGTTGATTTGCTTGTGAGGATAGAAATGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCATTGTCTATGGCTGCAAGTGAATTAGTTCAGCTAAGACAACGACACACTGTCTCTGGTTTAAGGGAGGGTTTTCGTTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAGGCACCAGTCCTGATACCACATCAAATAGTAATGCAAGTGAAACAAGAGGCGATGAGAGCCAAGCAAACAGTCTGGTAGATGGCCAACAAGAAAATTATGAACAACAGCAGATTAGGAGCCTGGAAACTGATGTGCGTCAGTTGCCTAATCGAACAGGAACTTTGGAGAGTAGCACAAGTGAGAGTATTAGTTGGCAAGAAGCTAGTAATCAAGGGGGGAATTGGCAGGAACAAATTGCTGAAGAAGGGGGAGGAAACTGGCGACAGAGTCCATTCAATCAGACAAGAGATGGAAGGGCAGTCGGTGATTGGCCACAGGAAACTCCCAGAAATTTAGCTGGGGAAGATCCTCATCCCCGGGAAGCTCAAAGAATTTGGCATGATGGTAACACTAGGGAAACTGTTGGTAATTGGTCCGAAGGACCTTCTGGAGCTACAAGGAATCGCCGTGGGGTTCCTATAAGAAGGTTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATCAGAACTTACCAGCATCAACTCCTGCCTCTCCTGAACAGGACCCAGACCAGCAGGGTGAGGAACGAGATGAGGGTCAACATGAAACCATTAACAGACCTTCACTGGTGTTGCCTTCTCCACCAGTACCTCCACCACAACCTCTGTGGCACCAAGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATGATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCTGCTCTAAACCGCTCAGGTGGTGAGAATGGATCGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTATAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGGTGGTGGTAAATGTCCTTTATGCCGAGCACCAATTCTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2550 0.4827 MTDFQPLQQKPEPADAHAEFELGLEEFMRGHLDDCMSFASCSSSRAPDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRVRLRHQRNSDSHTNVSSTMSDSRGSENQGSLGDASESENDYGTWSHDQTGSRNAHGDHNGSSREQSLDLGEVERERVRQIVQGWMESGISDHSSNVSQINNSQRAEWLGETERERVRNIREWVQMISQQRGSRGSRRDAQVSEGAQADRARGLVADNDESQPEHVRRDMSRLRGRQALVDLLVRIEMERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPLSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQAGTSPDTTSNSNASETRGDESQANSLVDGQQENYEQQQIRSLETDVRQLPNRTGTLESSTSESISWQEASNQGGNWQEQIAEEGGGNWRQSPFNQTRDGRAVGDWPQETPRNLAGEDPHPREAQRIWHDGNTRETVGNWSEGPSGATRNRRGVPIRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHQNLPASTPASPEQDPDQQGEERDEGQHETINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEMMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSGGENGSSAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPILEVVRAYSIL* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1793 849 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 849 - -
Gso10g1793 849 SUPERFAMILY RING/U-box 796 842 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 52 78 - -
Gso10g1793 849 CDD mRING-HC-C3HC5_NEU1 796 836 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 568 582 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 298 337 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 174 243 - -
Gso10g1793 849 ProSiteProfiles Zinc finger RING-type profile. 797 836 IPR001841 -
Gso10g1793 849 MobiDBLite consensus disorder prediction 766 789 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 222 243 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 41 78 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 323 337 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 181 221 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 652 705 - -
Gso10g1793 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 775 847 IPR013083 -
Gso10g1793 849 MobiDBLite consensus disorder prediction 551 566 - -
Gso10g1793 849 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 849 - -
Gso10g1793 849 Pfam Zinc finger, C3HC4 type (RING finger) 794 841 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 434 515 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 432 589 - -
Gso10g1793 849 Coils Coil 726 746 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 766 785 - -
Gso10g1793 849 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1793 Gso-Chr10 44531053 44537261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1793 797 843 C3H Transcription Factor Family AT3G06140 42.553 1.62e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1793 - - gmx:100784174 1658.66