Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1787 ATGTCAAGAAAGGAAGAACGGTCATCCAGAAAAGATGAATATAACAAATCTCTGCCTCCATTTGATACCAGGAGTGGATACGATTCAAGAACAGGCATTTACCACTCGCTAGTTAAGCTTGGCACAAAGCATGAAATCCCAACAAAGCCTGACCTTGGCACTGCCAATTTTGTGCTGTCACAGTTTCCACAAGCACACCTTGCTGAGGCAAGAATTGCATTCATTGATTCAGGTACTAATCGGAGTGTAAGCTATGGCGAGCTAAGACGGTCTATTTACTCCCTTGCATCAGCTTTGTTCAATCGACTTAAGGTTAGGAAAGGTGATGTGGTATTTGTATTGTCACCAAACTCAACCTTGTACTCAACCATATGCCTAGCTGTGTTATCAGTTGGAGCAGTTGTGACCACTGCCAACCCCATCAACACTGAATCAGAAATTGCCAAGCAAGTGCATGATTCAGGTGCAAAACTAGCCATCTCAACACTAGAGGATCTACACAAATTGGTCCCAACTGGGATTCCTACAATTCTCACTTCTCGTCCTTTTGACGGCAACATGTTATCAATTGAAGAGTTAATAGAAGACTGTTATGGTTCACCACAGTTGCCACAAGTTCCTGTGGCACAATCAGACACTGCTGCTATACTTTACTCTTCGGGGACCACAGGGAGAAGCAAAGGTGTACTTCTGACACATGCAAATATCATTTCCATAATGAGACTACTCTTCTGGCAAGTTGATGTCAGTGGATCCCAAGATGATGTTTTCTTTGCCTTCATTCCGATGTTTCATATCTATGGAATGATTTTCTTTGGATTAGGATTGCTGTGTATCGGTATTACAACAGTTTTGATGCAGAAATATGACTTCCAAGCTATGCTTGTTGCAATCCAGAAGTACAAGGTGAATAACTTACCAGCAGTGCCACCAGTGATCCTCGCACTAGTAAAACATTCAAGCAAAGTTAAGTGTGACTTGTCCAGCCTAAAAAGGGTGGGATCAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACAAGAGTTTAGAAGGATGTTTCCTTCGGTTGAACTAAGGCAAGGTTATGGCCTAACAGAAAGTAGTGGTGGAGCAGCATTTTTTGCCTCTGATAAAGATGCTAAAGCTCATCCAGATTCATGTGGGAAGTTGATTCCAACTTTTTGTGCAAAAGTGATAGACATTGAAACGGGGAAGCCTTTGCCTCCTCGCAAAGAAGGAGAGTTATGGTTCAAAAGTCCTACAATTATGAAAGAATATCTAGGAAATATGGAAGAAACAAGTGCAACAATTGATTCAGAAGGTTGGTTGAGGACTGGTGATCTTGGTTACATTGATGAGAATGGATTTGTTTATATAGTCGAACGAATAAAGGAGCTAATCAAGCACAATGGGTATCAGGTGGCTCCTGCAGAATTGGAATCCGTGCTGCTAAGTCACCCCCTTATAGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGATAGCAGCAGGTTCTGAACTCTCAGAAGACCAAGTCATTCAATTTGTTGCAGGCGAGGTAGCTCCATATAAGAAAGTGAGAAGGGTGAGTTTTATTGACACTATTCCAAAGTCAGCTGCTGGCAAGATATTACGCAAGGATCTTGTTTCTCAAAGCAGGCATCAACTTGTCTCCAAGTTATGA 1713 0.4227 MSRKEERSSRKDEYNKSLPPFDTRSGYDSRTGIYHSLVKLGTKHEIPTKPDLGTANFVLSQFPQAHLAEARIAFIDSGTNRSVSYGELRRSIYSLASALFNRLKVRKGDVVFVLSPNSTLYSTICLAVLSVGAVVTTANPINTESEIAKQVHDSGAKLAISTLEDLHKLVPTGIPTILTSRPFDGNMLSIEELIEDCYGSPQLPQVPVAQSDTAAILYSSGTTGRSKGVLLTHANIISIMRLLFWQVDVSGSQDDVFFAFIPMFHIYGMIFFGLGLLCIGITTVLMQKYDFQAMLVAIQKYKVNNLPAVPPVILALVKHSSKVKCDLSSLKRVGSGAAPLSKEVAQEFRRMFPSVELRQGYGLTESSGGAAFFASDKDAKAHPDSCGKLIPTFCAKVIDIETGKPLPPRKEGELWFKSPTIMKEYLGNMEETSATIDSEGWLRTGDLGYIDENGFVYIVERIKELIKHNGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVIAAGSELSEDQVIQFVAGEVAPYKKVRRVSFIDTIPKSAAGKILRKDLVSQSRHQLVSKL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1787 570 MobiDBLite consensus disorder prediction 1 24 - -
Gso10g1787 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Gso10g1787 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Gso10g1787 570 SUPERFAMILY Acetyl-CoA synthetase-like 64 562 - -
Gso10g1787 570 CDD 4CL 46 558 - -
Gso10g1787 570 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 19 569 - -
Gso10g1787 570 Gene3D - 464 567 IPR045851 -
Gso10g1787 570 Pfam AMP-binding enzyme 69 467 IPR000873 -
Gso10g1787 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 569 - -
Gso10g1787 570 Gene3D - 43 463 IPR042099 -
Gso10g1787 570 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1787 Gso-Chr10 44472035 44474749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1787 22 566 Monolignol Biosynthesis Gene Families AT1G20500 41.982 1.45e-149 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1787 K10526 - gmx:100775413 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1553 20 46164927 46167473 Gso10g1787 10 44472035 44474749 GST