Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1784 ATGGCACGCATGGGTCCAGGGTTCCGATTCCACCCCACCGACGAAGAGCTGGTGGTGTTCTACCTCAAGCGCAAGATGACCGGAAACCTCTCCCGCTACGACCACATCGCCGTCGTTGACGTCTACAAGCTCGAGCCCTGGGACCTTCCCTCTCTGTCGAAGCTGAAGACGAAGGACTTGGAGTGGTACTTCTTCAGCGCGCTGGATCGCAAGTACGGAAACGGCTCCAGGACCAACCGCGCCACCGAGAGGGGCTACTGGAAGACCACCGGGAAAGACCGTCCCGTCACCCACGGCGACCGCACCGTTGGAATGAAGAAGACGCTTGTTTACCACAGCGGCCGTGCCCCACAGGGCCGTCGCACCAACTGGGTCATGCACGAGTATAAGATGCTCGACGATGAATTGGCACGTTCCGGCACAGTGCTGGATGTGTTTGTTGTGTGTAGGATTTTCGAGAAGAGTGGTTCTGGGCCGAAGAATGGGGCAAAGTATGGTGCTCCCTTGGATGAGAAGGAGTGGGATGTTGAGGACGAGGATGAAGAGGATGAGCAGAAGGAGGTGGCTCCCTTGCTCGTTCCTTATAATGCGGTGGCTCCTCCTCCTCCCTTGTCGGCGGTTGCTGATAATGTGGTGGCTCATCCTCCTTTGCTGGCGGCGACTGCTGATAATAATTATCTGGTGGCTCCTCCTCCTCCTCCCTTGCAGGCTATTGTTGATGGGGCCTATGTTTCAACCGACGACCTTGACATGGAACTTGATTGGAGTGGTATAATTGACAGTGATACTTTGCCATCATTGAACTTTCATTACGGGGAGTGTAGTAGCCATGCTGAGTATTCCAAAGTATTCATCAAGGATCAGGAGCCATTGGCAGACACTTTTGAAATTTCTTGTCCTGAAAATGTCTGGCCTCTTGATATGACTGGGCAACATGGCGTGGGTACAAATTCAGGGGAAGATGGAGACAGTGGTGAGCTGAGCAATATTGGCAATTTTGATCTTTCATCGAATAATATGAATCTGGATCTTTACTGGGATGCCAACGAGAATCTTCCGATGGATGATGATGGATTTTTGGAATACAATGATATTGCAATTGGGAATGGGGATAATCCTACCGAGGCTGATCTTTCTGCAAATGCCATGCTAGATGAGTATGCTGCACTCGCTGATGATGATATTTACAAGTATATATCTTTTGATTCTCCTCAGATTCAAGAGAGTGAAAACTTTATTCCCAACCAAGGATCACCTTTCACCCAGCAGAATGTGGAGGGAGAAACCGCTGATAGAGCTGTGGTTAGTAATGAGGGTTCTTCAGTGCAGAATACACAGGAGGCAATGCTTGCATCAGGAAGTACAAATCCACTTGTTAAGCAGGCATATGGATGGTTAGCCAGCATACCTGCTGCGCCTGCACATGCTATGGAGTTTCCTGCTAAGGAGATTGCTCTTGGACTTCATCCTGTGGCTCAATCTTCCCATCCAGCTCATATAACTACTACAGGTATGATCAGCATAACAGACATTACTTTTAGAGACAATGCAATGGATTGGACTATGGGCAAAAATGGAGGGTTTAGCACTGTCATATCCACTGGGTTTTCGCAATCCGATGTTAATTCGGCTGCTTTGATGCCTGTTTCTGGCAAGACTGCATTTGTGCTGTCACATGGCTGGATTTTCCTGACTGGTTTCTCAGTTCTTATTCTTTCACTGAGTTGCAAGATCGGAAGCATCATGTATACTGGTAAATGA 1761 0.4884 MARMGPGFRFHPTDEELVVFYLKRKMTGNLSRYDHIAVVDVYKLEPWDLPSLSKLKTKDLEWYFFSALDRKYGNGSRTNRATERGYWKTTGKDRPVTHGDRTVGMKKTLVYHSGRAPQGRRTNWVMHEYKMLDDELARSGTVLDVFVVCRIFEKSGSGPKNGAKYGAPLDEKEWDVEDEDEEDEQKEVAPLLVPYNAVAPPPPLSAVADNVVAHPPLLAATADNNYLVAPPPPPLQAIVDGAYVSTDDLDMELDWSGIIDSDTLPSLNFHYGECSSHAEYSKVFIKDQEPLADTFEISCPENVWPLDMTGQHGVGTNSGEDGDSGELSNIGNFDLSSNNMNLDLYWDANENLPMDDDGFLEYNDIAIGNGDNPTEADLSANAMLDEYAALADDDIYKYISFDSPQIQESENFIPNQGSPFTQQNVEGETADRAVVSNEGSSVQNTQEAMLASGSTNPLVKQAYGWLASIPAAPAHAMEFPAKEIALGLHPVAQSSHPAHITTTGMISITDITFRDNAMDWTMGKNGGFSTVISTGFSQSDVNSAALMPVSGKTAFVLSHGWIFLTGFSVLILSLSCKIGSIMYTGK* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1784 586 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 192 - -
Gso10g1784 586 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 337 581 - -
Gso10g1784 586 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Gso10g1784 586 Gene3D NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Gso10g1784 586 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 4 192 - -
Gso10g1784 586 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 337 581 - -
Gso10g1784 586 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Gso10g1784 586 ProSiteProfiles NAC domain profile. 4 154 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1784 Gso-Chr10 44450059 44453574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1784 345 582 NAC Transcription Factor Family AT5G04410 29.435 4.40e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso10g1784 NAM 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1784 - - gmx:100808260 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1555 20 46185591 46189155 Gso10g1784 10 44450059 44453574 GST